Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40060 40 / 0.0002 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023159 [exp] 117 / 1e-32 AT4G40060 220 / 1e-70 homeobox protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G097100 [exp] 51 / 3e-08 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 50 / 8e-08 AT2G22430 248 / 6e-81 homeobox protein 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012753 pacid=23148202 polypeptide=Lus10012753 locus=Lus10012753.g ID=Lus10012753.BGIv1.0 annot-version=v1.0 ATGAAACAGATCCGAGATCTCAAATCCAAGCTCGCCGCCGACGACGACGACATAACCGCCGCAGGTGAAGAGATCGCAGAAGAGGAAGAAGATCGCGATG ATGATCTAAATCTTCAGCCGGCGGAGATTGTGCAAGAGCTGACGAACTCCTACGATGAGGAAGAAGGAGAAGAGGAAGAAGAAGAAGCGCCGCCGCTGAT TTTCAGCAGGGACGGATCGTCGGACAGCGATTCGAGCGCGATCTTGAACGATGAGTATAATTACGGTTATGCTCAGATGAAGTATCCGCCGCCGGCGGGG GGGGTGAAGGCGGGGGGAACGGGACACAAAAACACAACGCGGGGAGTGAAAGTGGAGGAGCACAATTTCTTCGGGAGCGAGGATCAGGAGGCGGCTTGTA ATTTCTTCTCCGACGAACAAGCTCCCAGCCTGAACTGGTGGAACTAA
AA sequence Show only first row Show all	>Lus10012753 pacid=23148202 polypeptide=Lus10012753 locus=Lus10012753.g ID=Lus10012753.BGIv1.0 annot-version=v1.0 MKQIRDLKSKLAADDDDITAAGEEIAEEEEDRDDDLNLQPAEIVQELTNSYDEEEGEEEEEEAPPLIFSRDGSSDSDSSAILNDEYNYGYAQMKYPPPAG GVKAGGTGHKNTTRGVKVEEHNFFGSEDQEAACNFFSDEQAPSLNWWN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10012753 [exp]	0	1
					Lus10012752 [exp]	1.4	0.8488
AT1G71080			RNA polymerase II transcriptio...		Lus10032448 [exp]	2.4	0.7477
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10003023 [exp]	4.5	0.8087
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042713 [exp]	4.9	0.7891
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	7.2	0.7889
AT3G07930			DNA glycosylase superfamily pr...		Lus10001994 [exp]	10.6	0.7472
AT4G31130			Protein of unknown function (D...		Lus10030038 [exp]	12.0	0.7241
AT5G64550			loricrin-related (.1)		Lus10019307 [exp]	12.2	0.7536
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	18.3	0.6842
AT3G61040		CYP76C7	"cytochrome P450, family 76, s...		Lus10027425 [exp]	18.8	0.6542

Compare expression of checked genes

Lus10012753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.