Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09290 103 / 1e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023158 [exp] 183 / 2e-56 AT1G09290 325 / 4e-109 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099500 [exp] 112 / 5e-30 AT1G09290 310 / 2e-104 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012754 pacid=23148220 polypeptide=Lus10012754 locus=Lus10012754.g ID=Lus10012754.BGIv1.0 annot-version=v1.0 ATGACTCCGTTCATGAACCCAAGGGTTTCCGCCATTGACAACAGGTTTCGCCAACCACCAATCCTTCGCCCGCCTTTCTCTAGAGAAGTGATTTCTTCAA TGATGGCCTCGACGGAACAAGGAAAAGGGACTGAAACCGGTCACAAACCAGACGAAGCAGATAGACAAGAAGAACAAGCAGAAGGAGGCAAAAAAGTGCC ACCAAGGAAGCAATGTTCATCTTCCAGAAGAAGAGAAATGGAAGAGCAGAAGGTGTTTGCCAGAGACGAGATGAAGAGTTCAGAAGTTGTTTCGCTATTG GATCGCGACAAATGCTTTCGAGTCGTTGCTTCTGCTGTGAAAGAGACTGTACCTGACTCCACCATTGACCTGAAATCTCCTGATATGTCGATCCTCGTCG AATTGCTGCCGCTTTCTGGGGTGGCGGATGGATCTTTGGTTGCTGCTGTGTCTGCTGTCCCGCAAAGGCTGACGAGTACGAAGCCGCGTCTCTGCATTAA GGCGTTGAGTTCTGCTGCCAAGTTAGAAGTTCTCCGGGTCGGGTCATTTTGA
AA sequence Show only first row Show all	>Lus10012754 pacid=23148220 polypeptide=Lus10012754 locus=Lus10012754.g ID=Lus10012754.BGIv1.0 annot-version=v1.0 MTPFMNPRVSAIDNRFRQPPILRPPFSREVISSMMASTEQGKGTETGHKPDEADRQEEQAEGGKKVPPRKQCSSSRRREMEEQKVFARDEMKSSEVVSLL DRDKCFRVVASAVKETVPDSTIDLKSPDMSILVELLPLSGVADGSLVAAVSAVPQRLTSTKPRLCIKALSSAAKLEVLRVGSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09290			unknown protein		Lus10012754 [exp]	0	1
					Lus10024992 [exp]	1.0	0.9842
					Lus10022108 [exp]	6.8	0.9591
AT3G52470			Late embryogenesis abundant (L...		Lus10000157 [exp]	7.5	0.8798
					Lus10037862 [exp]	7.9	0.8573
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	8.3	0.9591
AT5G26150			protein kinase family protein ...		Lus10024998 [exp]	9.6	0.9591
AT2G22180			hydroxyproline-rich glycoprote...		Lus10000688 [exp]	10.7	0.9591
					Lus10000824 [exp]	11.7	0.9591
					Lus10010826 [exp]	12.7	0.9591
AT5G57750			RING/U-box superfamily protein...		Lus10016541 [exp]	13.3	0.6340

Compare expression of checked genes

Lus10012754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.