Plant FIBer expression Database

Lus10012756 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G40050 597 / 0 Protein of unknown function (DUF3550/UPF0682) (.1)
AT3G03570 395 / 1e-131 Protein of unknown function (DUF3550/UPF0682) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023156
[exp]
1007 / 0 AT4G40050 752 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Lus10020328
[exp]
404 / 1e-134 AT3G03570 771 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Lus10005664
[exp]
400 / 5e-133 AT3G03570 769 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G072200
[exp]
697 / 0 AT4G40050 753 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Potri.007G096800
[exp]
691 / 0 AT4G40050 750 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Potri.013G073200
[exp]
438 / 5e-148 AT3G03570 794 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12070 SCAI Protein SCAI
Representative CDS sequence
>Lus10012756 pacid=23148177 polypeptide=Lus10012756 locus=Lus10012756.g ID=Lus10012756.BGIv1.0 annot-version=v1.0
ATGAGGACTAGCGAGGCTAGGTTCCTGCTGGAGGCGTATGTCTTCTACGACGCGATTCTTCACCGTAGGTACTTCGATGGAGCCAACGCCAAGGATCTAG
GCGTCAGATTTAAGGAGCTGAGGTTCTACGCTCGGTTTTTGCTTGTCTCGCTGATTTTGAACCGCCACGAAACTGTTCAGCAGCTCGTCGAGAGGTTCGG
AGTTCTCGTCGATGATAGCAAGTCGAAGTTTCGGGAAGCAAGCTTCAAAGAATGGAAGCTGGTGGTGCAAGAAATTCTCCGCTTTATGGAAGTTGATACT
GCATTCAAAAGTTCAAGGCCTGTGCGGTATTGTGCTCTATTTGATTCATACCCCGCTTCCCGACCATATGTGGCTCGTTTCCATGCAAAGAAGGTCCTGA
AATTCACAGACGCAATTCTGACAAGCTACCATCGGAATGAGGTTAAATTTGCAGAACTTACTATGGATACTTACAGAATGCTTCAACTTTTTGAATGGGA
GCCTAGTGGATCTTTCTATCAGAAACAACCTATTGAATCTGTCTCTGAAAAGCATCCTGTTGAGTCCCATGAAAATGGCTATGCAGTGGATCATTCTGCA
GCTTCTGGGATTATAGATATGAACCTTGCTTCCGATATGATAGATTCGGATCTTCCACCAAATCCTAGGAAGGCAGTTCTTTATCGTCCTTCTGTAACAC
ACTTGTTAGCAGTTATGGCAACAATTTGTGAGGAGCTACCGCCTGAAAGCATTATGCTTATTTATCTATCAGCTTCAGGAAAGAGTAATCAAAGCAGTGT
TTCTGGCATGGACAGCCACAACGTATCTCGGAAGCCCTCGAAATCCAAAGCTGTTTACAGCACAACATTTGCTGAAACAAATAACTCAAAGGGTGAATGT
CACTCCAACGGGAAACCAGAGACTAGTGGCTACTGCGATGACTGTATATGGTTGGGTCCTAAAGGCAATGGTGGTCCGAATATCCTCTACCCGGGTGATA
TAATCCCTTTTACTCGTAAACCTCTTTTTATGATCGTCGACAGTGGCGACAGCCATGCATTCAAGGCAGAGAGGGGAGAACCGGTCGCCGTGATGCTTTC
ACCGTTAAGGCCGTTATTTAAGAACACGCCCTCCTCCGTCCGGAGTCAAATCCACAATGGAAGCCAGTTTACCTTCTTCTTAACTTCCCCTTTACAAGCA
TTCTGTCAAATGGTTGGCCTCAACACTTCCGATATTGATACCGATGAATACAACAGTGCGGAGGAAATACTCGCCACTGCGTTTGGCGAGTGGGAGGTGA
TCCTCTGTACTTCAAGGAACCTGGACTTAGTCTGGGCACAAGTAGTTCTCGATCCATTTTTGCGGCGAATTATCCTTAGATTCATACTGTGCAGAGCTCT
GATGTTGTTCTTCAGCCCACCTAACCACATTGAGGAATGCACCCCGGTATGTGTCCCCGAGCTTCCGAGTTCGGTATCAGCAGGGTCCGACATTGTGCGG
TCAGCAGTCCTCCGGCTCGCAGATCAGCTGAACGTAGTCGAATGTTTCCGGTTCAACAACTCGACAGTAGGGAAATGA
AA sequence
>Lus10012756 pacid=23148177 polypeptide=Lus10012756 locus=Lus10012756.g ID=Lus10012756.BGIv1.0 annot-version=v1.0
MRTSEARFLLEAYVFYDAILHRRYFDGANAKDLGVRFKELRFYARFLLVSLILNRHETVQQLVERFGVLVDDSKSKFREASFKEWKLVVQEILRFMEVDT
AFKSSRPVRYCALFDSYPASRPYVARFHAKKVLKFTDAILTSYHRNEVKFAELTMDTYRMLQLFEWEPSGSFYQKQPIESVSEKHPVESHENGYAVDHSA
ASGIIDMNLASDMIDSDLPPNPRKAVLYRPSVTHLLAVMATICEELPPESIMLIYLSASGKSNQSSVSGMDSHNVSRKPSKSKAVYSTTFAETNNSKGEC
HSNGKPETSGYCDDCIWLGPKGNGGPNILYPGDIIPFTRKPLFMIVDSGDSHAFKAERGEPVAVMLSPLRPLFKNTPSSVRSQIHNGSQFTFFLTSPLQA
FCQMVGLNTSDIDTDEYNSAEEILATAFGEWEVILCTSRNLDLVWAQVVLDPFLRRIILRFILCRALMLFFSPPNHIEECTPVCVPELPSSVSAGSDIVR
SAVLRLADQLNVVECFRFNNSTVGK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G40050 Protein of unknown function (D... Lus10012756
[exp]
0 1
AT5G45900 ATAPG7, ATG7, A... AUTOPHAGY-RELATED 7, AUTOPHAGY... Lus10025416
[exp]
2.2 0.8838
AT3G62220 Protein kinase superfamily pro... Lus10038042
[exp]
7.3 0.8649
AT1G21380 Target of Myb protein 1 (.1) Lus10029739
[exp]
9.9 0.8999
AT2G16060 ATGLB1, ARATHGL... CLASS I HEMOGLOBIN, hemoglobin... Lus10005467
[exp]
11.6 0.9018
AT5G22350 ELM1 ELONGATED MITOCHONDRIA 1, Prot... Lus10005191
[exp]
18.3 0.8579
AT2G20320 DENN (AEX-3) domain-containing... Lus10000499
[exp]
18.9 0.8980
AT5G03540 ATEXO70A1 exocyst subunit exo70 family p... Lus10043432
[exp]
24.0 0.8448
AT5G54650 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homo... Lus10035827
[exp]
24.9 0.8670
AT5G54650 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homo... Lus10036609
[exp]
31.5 0.8638
AT4G17260 Lactate/malate dehydrogenase f... Lus10004350
[exp]
33.4 0.8726

Lus10012756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.