Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22860 239 / 1e-72 Vacuolar sorting protein 39 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148700 [exp] 274 / 3e-85 AT1G22860 1144 / 0.0 Vacuolar sorting protein 39 (.1) Potri.001G081900 [exp] 272 / 1e-84 AT1G22860 1120 / 0.0 Vacuolar sorting protein 39 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10367 [flax] [poplar] Vps39_2 Vacuolar sorting protein 39 domain 2 CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Lus10012758 pacid=23148156 polypeptide=Lus10012758 locus=Lus10012758.g ID=Lus10012758.BGIv1.0 annot-version=v1.0 ATGTTTATACTGCATCCATCCCCTGTGGTGTACAGGTACCTGCAGTGGTTGATTGAAGATCAAGACTCTGTTGACACAAACATCCACACATTGTATGCCC TTTCACTTGCAAAGTCAGCAATTGAAACCGTTGAGCTTGAAACTTCCTTCGAGGACTCGGATGATGGAAGTATAGAGGTTACAAGATTTCCCGACTCTGA CAAGAGCCTAATCTTTCAGAGTCCTGTTCGTGAAAGGTTGCAAATATTCTTACAGTCATCAGACCTTTATGATCCAGAAGATGTCCTTGAGTTAATAGAA GGTTCAGAATTGTGGCTGGAAAAGGCTATTTTATACCGAAAACTAGGACAAGAGGCGTTGGTACTACAAATTCTGGCTCTGTTGCTAGATATGTATTTAG ATCCACAGAATGGAAAGGAACCCATGTTTAATGCTGCTGTCCGCCTCTTGCACAATCATGGAGAGTCTTTAGATCCTTTACGCGTGTTGGAGACACTTTC AGGTGACATGCCGCTTCAGGTGGCCTCTGACACCATATTAAGGATGTTGAGGGCTCGGGTACATCATCATCATCAAGGGAAACAATGGTTTTTATTTAAA AGGTTCGACTCTGTGGAACAACTAAAACCGTTGAACCTCGCTCTCATCCAGTTCATGTTGGTTGGTATTTTGGCAGTGTTTCCGTCGCCAAGGCGAATCA ACTTCAGTTTCGGGACGCGACTTCAAGGAAGATGTTCTCGTGAAACCGGGATGGCTGGTTACTCGATAGGGCAAGCGAACCGGGTTACATCTGATTCGAG AGAGGGTTACTGTGATTTCTTCAGGATGTGA
AA sequence Show only first row Show all	>Lus10012758 pacid=23148156 polypeptide=Lus10012758 locus=Lus10012758.g ID=Lus10012758.BGIv1.0 annot-version=v1.0 MFILHPSPVVYRYLQWLIEDQDSVDTNIHTLYALSLAKSAIETVELETSFEDSDDGSIEVTRFPDSDKSLIFQSPVRERLQIFLQSSDLYDPEDVLELIE GSELWLEKAILYRKLGQEALVLQILALLLDMYLDPQNGKEPMFNAAVRLLHNHGESLDPLRVLETLSGDMPLQVASDTILRMLRARVHHHHQGKQWFLFK RFDSVEQLKPLNLALIQFMLVGILAVFPSPRRINFSFGTRLQGRCSRETGMAGYSIGQANRVTSDSREGYCDFFRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22860			Vacuolar sorting protein 39 (....		Lus10012758 [exp]	0	1
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	12.9	0.9057
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	18.6	0.8948
AT1G68300			Adenine nucleotide alpha hydro...		Lus10041436 [exp]	23.0	0.8951
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	27.3	0.8932
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	28.4	0.8945
					Lus10021689 [exp]	29.5	0.8910
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	31.1	0.8933
AT3G06760			Drought-responsive family prot...		Lus10013420 [exp]	32.6	0.8556
AT1G27170			transmembrane receptors;ATP bi...		Lus10005171 [exp]	34.3	0.8868
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	35.4	0.8918

Compare expression of checked genes

Lus10012758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.