Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 157 / 5e-43 HXXXD-type acyl-transferase family protein (.1) AT4G15390 145 / 1e-38 HXXXD-type acyl-transferase family protein (.1) AT5G47950 143 / 8e-38 HXXXD-type acyl-transferase family protein (.1) AT3G30280 137 / 8e-36 HXXXD-type acyl-transferase family protein (.1) AT1G24420 130 / 4e-33 HXXXD-type acyl-transferase family protein (.1) AT1G24430 126 / 1e-31 HXXXD-type acyl-transferase family protein (.1) AT5G47980 110 / 4e-26 HXXXD-type acyl-transferase family protein (.1) AT5G23970 97 / 2e-21 HXXXD-type acyl-transferase family protein (.1) AT4G15400 88 / 1e-18 HXXXD-type acyl-transferase family protein (.1) AT1G78990 78 / 3e-15 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000319 [exp] 399 / 5e-136 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 394 / 6e-134 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 387 / 2e-131 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 307 / 4e-100 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 305 / 2e-99 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10025867 [exp] 283 / 4e-92 AT3G26040 155 / 2e-43 HXXXD-type acyl-transferase family protein (.1) Lus10036077 [exp] 243 / 9e-75 AT1G24420 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1) Lus10036126 [exp] 240 / 1e-73 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1) Lus10001107 [exp] 230 / 4e-70 AT3G26040 193 / 2e-56 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124268 [exp] 247 / 6e-77 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 247 / 6e-77 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 238 / 1e-73 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 236 / 7e-73 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 236 / 1e-72 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 236 / 1e-72 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 211 / 3e-63 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 211 / 1e-62 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 206 / 3e-61 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 172 / 2e-48 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10012759 pacid=23142373 polypeptide=Lus10012759 locus=Lus10012759.g ID=Lus10012759.BGIv1.0 annot-version=v1.0 ATGGAAGTGTCAGTGATATCAGTTGAGTGTATCAAACCCCTTTCACTTTCAGCTACAACCCATGATGGTGAAGTCAAATTCAAGCCATTTAAGCTTAGTA TGCTCGACCAATTCGTCCCCTCCATTTACTCTCCACTCATCTACTTCTACCCTCTCAAACCAACCCATGATGGTTATAGCTCAGTATCCTCCACCCTGAA AGCCTCACTTTCCAAGACACTAGACATCTTCTACCCTCTCTCCGGCCGACTCAACAACAATGACCAAAACAGGCCCACCATCATCCACGACTTCCACCAA GGAGTCCCGTTCGTCGAGGCTCGAATCCACAGACACCGACTCGCCGATTTCCTAAACCCGCCCAAGCTTGAATTCCTCAACAAATTGCTTCCTCTGGAGC CATGCTGTCTCGTCTCAACGGACAGTCCTCAAGTTGCTATCCAACTCAACACATTCGACTGCGGAGGGATCGCCCTTGGGGTGTGCCTACACCACCGCGT CTTGGACGGCGCCTCCATGAGCGCATTCCTCAAGACATGGGCAGCCGCTGCAGCGACAGATGGCGGCCGCTGTCCAGTGATGGTGCATCCGGATTTCGAC AGAGCATCTTCTGTTTTCCCGCCTATTGAACTGTCCCCGCTCTCCCTGCCGCAGGATAATAATAATATCCCATCAACTGAAACTAGAAGGAGCCGCCCGA GAAGATTCGTGTTCGACAGCGATGCCCTATCGGCATTGAAATCGATTTCGAGGAGTGATGAACTTGACAACCCGTCTCGAACGGAAGTAGTATGTGCTTT CATTTGGAAGCACGCAATGAAGGCAGCTGTTGACACGAAATCACCCCAACTGGTGCGTTTCTTACAGGGGGTTAATATAAGGTCAAGAATGGGTCAACGG TTGACCAAGACTTGCTTTGGCAATCTCGCGTCAACGGCAGTTGTTTCTACTAGTGTCGGTGACGGCGGGGAGTCGATGAAGGAATTGGTGGCTAGTTTAA GAAAAGGGGTTCAAGGGATTAACGAAAAATACCTTACTTCCATCTCTGCTGAAGACTGGTTTGCAGATTTTACCGCAGAAGGCGAGGAAGAAAGTACTAG TACTAATGATACTAGTGAACATGATGAGTTCCTTACTTGTTCGAGCTGGAATGGATTTGGTTTCAATGATTTCGACTTCGGGTTAGGAAACCCAATATGG ACTGGTTTGTTTGGAGATGCTAGTGGTAAACATCCTCCATTGCCATGTTCCTCTGTGATTGTTCTCAAGGAAGCTCAAAACAATGATGGAGTTGAGGCAT GGATAACGCTCGACAAAGATGTCATGCCTGCTCTTGAACTCGATCCTCACTTCTTGAAGTTTGCAACTCCGAATCCTCCTATCTTTTTCAACTGA
AA sequence Show only first row Show all	>Lus10012759 pacid=23142373 polypeptide=Lus10012759 locus=Lus10012759.g ID=Lus10012759.BGIv1.0 annot-version=v1.0 MEVSVISVECIKPLSLSATTHDGEVKFKPFKLSMLDQFVPSIYSPLIYFYPLKPTHDGYSSVSSTLKASLSKTLDIFYPLSGRLNNNDQNRPTIIHDFHQ GVPFVEARIHRHRLADFLNPPKLEFLNKLLPLEPCCLVSTDSPQVAIQLNTFDCGGIALGVCLHHRVLDGASMSAFLKTWAAAAATDGGRCPVMVHPDFD RASSVFPPIELSPLSLPQDNNNIPSTETRRSRPRRFVFDSDALSALKSISRSDELDNPSRTEVVCAFIWKHAMKAAVDTKSPQLVRFLQGVNIRSRMGQR LTKTCFGNLASTAVVSTSVGDGGESMKELVASLRKGVQGINEKYLTSISAEDWFADFTAEGEEESTSTNDTSEHDEFLTCSSWNGFGFNDFDFGLGNPIW TGLFGDASGKHPPLPCSSVIVLKEAQNNDGVEAWITLDKDVMPALELDPHFLKFATPNPPIFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	0	1
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031151 [exp]	1.0	0.9135
AT2G39170			unknown protein		Lus10028816 [exp]	4.0	0.8692
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000319 [exp]	4.6	0.8716
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	5.7	0.8985
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10012893 [exp]	5.7	0.8807
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Lus10017430 [exp]	6.0	0.8732
AT3G46570			Glycosyl hydrolase superfamily...		Lus10032039 [exp]	6.9	0.8510
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	7.9	0.8681
AT1G14950			Polyketide cyclase/dehydrase a...		Lus10033397 [exp]	9.5	0.8461
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	12.4	0.8821

Compare expression of checked genes

Lus10012759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.