Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13110 193 / 4e-58 BSD domain-containing protein (.1) AT1G03350 190 / 2e-55 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042670 [exp] 173 / 1e-48 AT1G03350 305 / 7e-99 BSD domain-containing protein (.1) Lus10029636 [exp] 173 / 1e-48 AT1G03350 302 / 1e-97 BSD domain-containing protein (.1) Lus10034015 [exp] 120 / 1e-31 AT1G03350 54 / 2e-08 BSD domain-containing protein (.1) Lus10034013 [exp] 95 / 2e-20 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G199000 [exp] 244 / 2e-76 AT4G13110 179 / 4e-53 BSD domain-containing protein (.1) Potri.010G028801 [exp] 229 / 5e-70 AT1G03350 211 / 1e-62 BSD domain-containing protein (.1) Potri.008G199100 [exp] 226 / 7e-69 AT4G13110 215 / 8e-66 BSD domain-containing protein (.1) Potri.015G050700 [exp] 121 / 6e-33 AT1G03350 116 / 1e-31 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [flax] [poplar] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Lus10012761 pacid=23142357 polypeptide=Lus10012761 locus=Lus10012761.g ID=Lus10012761.BGIv1.0 annot-version=v1.0 ATGAATTTCTTTCAAACCTTCTCCGACGACCTTACGCCGCCGGGTTCCCCGACGTCGATCTCCCAGCCACCAAGCTCAGCCTCCGATTCCAACTCCGATC CAGGATCCAATCCGCTGCCTTTCACCTCATCCATCAATCTCAATCCATGGTCCTTCGGCGTCATGATAAAAAAGCTCGCCACTAAATCCGAGTCCGTCAT CGAAACTTACCGCCGCGACCTGGAGGAGCTGGGATCTGGCTTGAGGAAAGAGACAGCCGTGATCCGCGAGGTCGCCTCTCGCGCCGTCAAGGACCTTCCT GCTTCTCTGGAAGCCAGCGCTTCCGCCGCTCAGGAGTCGCTCGAGACCGTCGGCCAGGCAATCGACGATATCGGCGCCACCGTCTGGAAATCCACGGCGC AGATCGTTTCGCACGGTAGAGATTTCTCAAACGTCTCCTCAGATTATTATTATTATGATCACGACTCTGATTCCTCGAATAACTGCGGGCGGGGCTCGTC TTCGCAAATGAAACCCTACAGTCGTTACGAAGCGCAGTTGCTCGCGATGCAGAGTAACTTGAATACTTACTGTACAGAACCAGAGGATAATCAGGGTTAT GGTGATTGGAGATTTGGGTTGCGTGGTTCTGTTGTGGAGGAGAAAAGAGAGGAGATTGAGAAACTGTTGGCTGAGAGTGAAGTTGTTAGGGAGATTTATG ACGAGGTTATGCCTAGTAAGGTAAACATTGAAACTTTTTGGAGCAGGTATTTCTACAGACTGCAAAAGCTAAAGGAAGCTGAGGAGGCTAGAGCTAAGAT TGTGAAGCGTGCCATATCTGCTGAGGAAGAGGATTTAAGTTGGGATTTTGATGACGATGATGATGATACAGTTGTTACGAATAAGCCCTCTATCTCTATG CCAAGTGATGACAGAGAACTAGCGGAGAAGATCAAGAATGAGTCGAATGACATAAGAGAAAGTGCTGAAGTTGGGGATAAAAATGTTCACCAAGGAACCA ATGACGAGGGTCTGAAGGAGGAGGGTGGATCTTGGGAGGAGAAGGAGGAGGATGGATCTTGGGAGGAGAAGGAAGGCACCAATGGCAGAGGTGGCGAATC GTTGGGATGGGATGAAATTGAAGATATTGGAAGCAATGGTGATGATAGCAGCAGAAACACCAATGGAGAAAGGGGTGATGAAGGCATAACTCGAGTTGAT TTGAGGAAGCGGTTGAGTTGTGCCAAGGAAGATGAGGATCTGAGTTGGGATATCGAAGATGAAGATGATGCTGAAGAATCTGCCAGGCATTGA
AA sequence Show only first row Show all	>Lus10012761 pacid=23142357 polypeptide=Lus10012761 locus=Lus10012761.g ID=Lus10012761.BGIv1.0 annot-version=v1.0 MNFFQTFSDDLTPPGSPTSISQPPSSASDSNSDPGSNPLPFTSSINLNPWSFGVMIKKLATKSESVIETYRRDLEELGSGLRKETAVIREVASRAVKDLP ASLEASASAAQESLETVGQAIDDIGATVWKSTAQIVSHGRDFSNVSSDYYYYDHDSDSSNNCGRGSSSQMKPYSRYEAQLLAMQSNLNTYCTEPEDNQGY GDWRFGLRGSVVEEKREEIEKLLAESEVVREIYDEVMPSKVNIETFWSRYFYRLQKLKEAEEARAKIVKRAISAEEEDLSWDFDDDDDDTVVTNKPSISM PSDDRELAEKIKNESNDIRESAEVGDKNVHQGTNDEGLKEEGGSWEEKEEDGSWEEKEGTNGRGGESLGWDEIEDIGSNGDDSSRNTNGERGDEGITRVD LRKRLSCAKEDEDLSWDIEDEDDAEESARH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03350			BSD domain-containing protein ...		Lus10012761 [exp]	0	1
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	1.0	0.9014
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10020376 [exp]	2.0	0.8766
AT2G15695			Protein of unknown function DU...		Lus10019874 [exp]	3.5	0.8828
AT2G46550			unknown protein		Lus10005973 [exp]	3.9	0.8796
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10018727 [exp]	4.2	0.8548
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10006372 [exp]	4.5	0.8665
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	5.0	0.8751
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	8.0	0.8563
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	8.7	0.8572
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	8.8	0.8664

Compare expression of checked genes

Lus10012761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.