Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18940 492 / 1e-175 Mo25 family protein (.1.2) AT4G17270 233 / 8e-74 Mo25 family protein (.1) AT5G47540 232 / 2e-73 Mo25 family protein (.1) AT2G03410 194 / 1e-58 Mo25 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034014 [exp] 636 / 0 AT5G18940 522 / 0.0 Mo25 family protein (.1.2) Lus10027342 [exp] 237 / 2e-75 AT5G47540 592 / 0.0 Mo25 family protein (.1) Lus10010497 [exp] 236 / 4e-75 AT5G47540 594 / 0.0 Mo25 family protein (.1) Lus10017565 [exp] 235 / 1e-74 AT5G47540 593 / 0.0 Mo25 family protein (.1) Lus10039045 [exp] 204 / 7e-63 AT5G47540 517 / 0.0 Mo25 family protein (.1) Lus10041405 [exp] 199 / 8e-60 AT5G47540 446 / 3e-157 Mo25 family protein (.1) Lus10036523 [exp] 192 / 6e-57 AT5G47540 446 / 1e-156 Mo25 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028700 [exp] 520 / 0 AT5G18940 469 / 5e-167 Mo25 family protein (.1.2) Potri.008G198900 [exp] 506 / 0 AT5G18940 436 / 5e-154 Mo25 family protein (.1.2) Potri.002G222800 [exp] 234 / 2e-74 AT5G47540 458 / 1e-162 Mo25 family protein (.1) Potri.014G162100 [exp] 235 / 9e-74 AT5G47540 461 / 1e-162 Mo25 family protein (.1) Potri.016G011100 [exp] 231 / 3e-73 AT5G47540 589 / 0.0 Mo25 family protein (.1) Potri.010G155400 [exp] 231 / 5e-73 AT5G47540 588 / 0.0 Mo25 family protein (.1) Potri.006G014800 [exp] 228 / 6e-72 AT5G47540 569 / 0.0 Mo25 family protein (.1) Potri.019G057100 [exp] 179 / 7e-53 AT5G47540 411 / 5e-144 Mo25 family protein (.1) Potri.010G155300 [exp] 124 / 4e-33 AT5G47540 348 / 6e-121 Mo25 family protein (.1) Potri.016G011300 [exp] 72 / 4e-15 AT5G47540 262 / 1e-88 Mo25 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08569 [flax] [poplar] Mo25 Mo25-like
Representative CDS sequence Show only first row Show all	>Lus10012762 pacid=23142355 polypeptide=Lus10012762 locus=Lus10012762.g ID=Lus10012762.BGIv1.0 annot-version=v1.0 ATGTCGTTTTCCTTCTTCAAGCCGTCCCGGCCGAAGACGCCGCAGGAGGTTGTCAGAGCAATCAAGGACAGCCTAACCGCTCTCGATACCAAAACCATCG TCGATGTTAAAGCCCTCGAAAAGGCATCGGAAGAAGTTGAGAAGAACTTCGTGAGTATGAGATATATGCTTTCTGGGGATGGAGAGGTTGAACCGAACAT GGAACAAGTTTCACAGTTGGCAACTGAAGTTTGCAACGAGGATGTGCTTACACTTATGGTTCATGAATTGCTCAATTTAGGATGGGCAGCAAGAAAAGAT TTGGTCCACTGCTGGTCAACATTGTTGAAGCATAAGGTTGAGTCGACACATTGCTGTGTGGAATATATTGAGAATCATTTGGAATTACTAGACTTTCTTG TTGGTGATAACGGAGGATTAGTTGCTGGGGTTAGTTTGCATTTCCATGACCAAGCCAGTTTTAGCTTCCGTTTCATTCAAGGCTTCTATTTTCTTTTGAT TAGCTACGACAGCAAAGAAATTGCTCAGAATTGTGGAATTATGTTGAGGGAATGCATCAAATTCCCGTCACTTGCAAAATACATATTAGAGTCGGCAAGC TTTGAGCTGTTTTTCAAATTCGTGGAGTTGCCAAACTTTGACGTTGCTTCTGATGCCTTCTCCACGTTCAAGGATTTGCTCAGTAAACATGATACTATAG TTGCAGAGTATCTTACTGTACATTACGATGAGTTCTTTGATCTATATGAGAAGCTTTTGACATCTCCTAATTATGTAACTAGGAGGCAGTCGGTGAAGCT TCTCTCTGAGTTCCTCTTTGAACCTCCGAATTCCAGCATAATGAAGCGCTTCATTCTCGAAGTTCGTTACCTAAAAGTCATGATGACATTGCTGAGGGAC TCGAGTAAAACCATCCAGATCTATGCGTTTCACGTTTTCAAGGTCTTTGTTGCTAATCCTAACAAGCCACAAGAAGTGAAGATGATACTGGCGAAAAATC ACGAAAAACTGGTGGAATTGCTTATAGACCTCTCAGTCGGGAAAGGGTCAGAAGACGAACAGTTTGAAGAGGAAAAGGAAATGATCATCAAGGAAATCTC AAGACTGTCTCGTCTACCTAATCTTCTCAATGGTTAA
AA sequence Show only first row Show all	>Lus10012762 pacid=23142355 polypeptide=Lus10012762 locus=Lus10012762.g ID=Lus10012762.BGIv1.0 annot-version=v1.0 MSFSFFKPSRPKTPQEVVRAIKDSLTALDTKTIVDVKALEKASEEVEKNFVSMRYMLSGDGEVEPNMEQVSQLATEVCNEDVLTLMVHELLNLGWAARKD LVHCWSTLLKHKVESTHCCVEYIENHLELLDFLVGDNGGLVAGVSLHFHDQASFSFRFIQGFYFLLISYDSKEIAQNCGIMLRECIKFPSLAKYILESAS FELFFKFVELPNFDVASDAFSTFKDLLSKHDTIVAEYLTVHYDEFFDLYEKLLTSPNYVTRRQSVKLLSEFLFEPPNSSIMKRFILEVRYLKVMMTLLRD SSKTIQIYAFHVFKVFVANPNKPQEVKMILAKNHEKLVELLIDLSVGKGSEDEQFEEEKEMIIKEISRLSRLPNLLNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18940			Mo25 family protein (.1.2)		Lus10012762 [exp]	0	1
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	7.3	0.9025
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	7.7	0.8966
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10010851 [exp]	8.4	0.8894
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	8.6	0.8987
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10042895 [exp]	12.7	0.8898
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	15.2	0.8908
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	15.5	0.8940
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10043123 [exp]	19.4	0.8795
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	23.0	0.8716
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	23.4	0.8879

Compare expression of checked genes

Lus10012762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.