Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15475 734 / 0 F-box/RNI-like superfamily protein (.1) AT2G20790 726 / 0 clathrin adaptor complexes medium subunit family protein (.1.2.3) AT5G01720 154 / 2e-38 RNI-like superfamily protein (.1) AT5G23340 149 / 2e-38 RNI-like superfamily protein (.1) AT2G25490 147 / 2e-36 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G27920 145 / 1e-35 F-box family protein (.1) AT5G25350 129 / 1e-30 EBF2 EIN3-binding F box protein 2 (.1) AT1G77000 112 / 4e-26 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G21410 110 / 1e-25 SKP2A F-box/RNI-like superfamily protein (.1) AT1G47056 112 / 2e-25 VFB1 VIER F-box proteine 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034013 [exp] 1566 / 0 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10002014 [exp] 167 / 9e-43 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 161 / 6e-41 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012214 [exp] 159 / 4e-39 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10001264 [exp] 155 / 6e-39 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10030102 [exp] 155 / 6e-39 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 152 / 7e-38 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10013444 [exp] 147 / 7e-38 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 147 / 7e-38 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028600 [exp] 862 / 0 AT2G20790 790 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.006G105400 [exp] 162 / 3e-41 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 155 / 9e-39 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 153 / 4e-38 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 149 / 5e-37 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.019G123400 [exp] 145 / 1e-35 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 141 / 1e-35 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 139 / 1e-33 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 133 / 9e-32 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 131 / 3e-31 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10012764 pacid=23142359 polypeptide=Lus10012764 locus=Lus10012764.g ID=Lus10012764.BGIv1.0 annot-version=v1.0 ATGCGAGGTCACAATTGGATCAACACGCTTCTTCCCGACGAAATCATCCTCGAGATCTTCAACCGCCTCGATTCCAAGCAGGCTCGTGACTCCTGCTCCG TCGTATGCAAGCGGTGGCTCACCTTGGAGCGGCTTAGCCGGACCACTCTCCGGATCGGCGCTTCCGGCAACCCGGATTTCTTCATCCACCTCCTCTGCAC CCGTTTCCCCAATGTCAAAACCATTCACATTGATGAGCGGCTCTCCATTTCTCTTCCCGTACAGCTGGGGCGGAAGAGAAGAAAAGGCATCAATGAGTCG TATTTCAAGCTGCACAGCATGTTTCAGGAGGATCTGCCTGATTCCGAACAATTTGATTCGTTTTGTTTGTCTGATGTTGGATTGATTACCCTCAGCGATC AATTCCCAGCTCTCGAACATTTGAGCTTGATATGGTGCTCCAATGTTTCAAATTTGGGTTTAATTTCTCTTGCCCTGAAATGCTCGCTCTTGAAATCTCT TGATTTGCAGGGTTGCTATGTTGGTGATGGCGGTCTTGCTGCTGTTGGAAAGTGCTGTAAACAACTAGAGGAACTAAATTTGCGGTTTTGCGAAGGTGTA AGTGACGTGGGCTTGACTGAGCTAGCTGAAGGCTGTGGAATATCGTTAAAGACTCTTGGAGTTGCAGCTTGTGCAAAAATAACGGACAAATCGTTGGAAG CAGTGGGTTCCCACTGCAAATCCTTAGAAACGTTGTCACTGGATTCTGAATTTATTCAGAATGATGGGGTCCTTGCCATTGCTAAAGGGTGCCGTCACCT GAAAGTCCTGAAGCTGCAATGTATCAATGTTACCGATGAAGCCCTTATAGAGGTAGGAAAGTATTCTTCGTCACTGGAGGTGTTGGCTTTGTACAGCTTC CAGCGGTTTACTGACAGGGGCTTGTTTGCTATCGGAGATGGATGTAAGAAGTTGAAAAATCTTACTCTTAGCGACTGTTATTTCCTCAGTGACCAGGGTT TAGGATCAATTGCCATGGGGTGTAAAGAACTCACACATCTTGAAGTTAATGGTTGCCACAACATTGGGACTCTTGGGTTGGAAGCCATTGGACGATCATG CACGCGCCTTACTGAGTTGGCTTTGTTATACTGCCAAAGGGTTGGTGATAATGCTCTTCATGCAATTGGGAAAGGATGCAAGTCTTTGGAGGCCCTTCAC TTGGTAGATTGTTCTAGCATTGGAGATGATGGCATTTGTAGCATAGCTAAGGGGTGCACTAATTTGAAGAAACTTCATATCCGTCGGTGTTATGAGGTTG GGAACAAAGGTATTATAGCCGTCGGCGAGAACTGCAAATCACTGGAAGATCTTAGCCTTAGATTTTGTGATAGGGTGGGAGATGATGCCCTTGTCTCCGT TGGCCAATGCCACTCCCTGCAAACCCTAAATGTTAGTGGGTGCCATCAAATTGGCGACACCGGAATTACAGCGATTGCGAGAGGCTGCCCTGAACTTAGT TACCTTGATGTGAGCGTGCTCCAGAATCTAGGGGACATGGCACTTGCGGAGCTTGGAGAGGGTTGTCCAGCTCTAAAAGAGATGGTGATCTCACACTGCC GTCAAATAACAGACGTAGGGCTCTCCCATCTCGCAAGAAACTGCGAGATGCTTGAATCTTGCCACCTAGTTTACTGCCCTGGGGTAACAGCAGCTGGGGT GGCCACCGTGGTGTCTGGTTGCCAGAACATAAAGAAGGTGCTCGTCGAGAAGTGGAAGGTCAGCGAGAGAACCAAACGCAGAGCTGGCTCAGTCATCTCC TACCTATGCATCGATCTTGAGCAGGTTACGGAAGCAGTGCCGCCGGAGCAGAAACAGCGGAGCGGAAGTCACAAGGCGATGCCCGGTGGTTGTAGCATCA GAGCTCTGTGGATCCTCAACAGCTTCGACACAGTCGTTTTTTCCAGGAGGTTTCCGGTGGTGGAGAAACGGTGGAAGGCCGCTTGCAAGATCGAAGGCAT CAGCTCCTCCGTAGAAGATCTTGTTAAGTGCGCTCTAGTTCCGATTCTTCCCAATGATTCCGAGCTCGCTGCCGCATTTGCCGAAAGGAAGCGAAGGGAG GGATCCACGCGAGGTTTTGGGATAAGAGTGGTACAGTCAACTCAAGGATCAGACTCTTGGGTTGATGACCCGATCACTCGTCATATCATAAGTCTGCGCA TCGGTGCGGAGGAGGAAGAAGATAAAGAACTGCTGTGGCCATTAATTCTTCATTTGAAAGGTCCCTATACCATGCTTGTTTTGCCACTGGTTGAGCCTAA GCATTTGAAGGCTTATGGGAAAATGTGCACAAACCCCAGTTGTGGGGATGCTGTTGGTGAAGAAGCAAGTTTGTCTAGCCTCCTGCTTGATCTTCCTTCC ATCACAGGAGCCTTTATGGTGGCACATGCTGTTGGTGACATTGTTACTGGTGATATGGTGGAACCTGAGGTGCTCGTTAGTGCATCTCCCTCTGTGGGAG GATTGTTGGATTCATTGACGGGGAGCATAGGAATTACAGGTATTGCAGCCAGGGCCAAACCTGTTGCTACACCAGTTGCAGCTGCTACCCCCTTAGGCAC TGCTGCTATCGGATCTGTGGCTTTAGATGCTCCAGGATCTAGACCTTTGGATAAAGATGCACTTCAAAATTTCATTAGCAATGCAATGCCTTTCGGTACT CCCTTGGACCTTAACTATCTGAATATCTTTGCTATCAAAGCCAATGGCTTTACTTCATCAGATTTGCCTCCAGCAGACCTCAAGCAGCCAGCATGGAAGC CATATCTCTACAAAGGAAAGCAAAGAATACTTTTCACTATTCATGAGACAATACATGCGGCTATGTATGACAGGGATGACATTTCAGATACTATGTCGGT AGCAGGACAAATCAATTGTCGAGCAGAATTGGATGGGTTGCCTGATGTGTCTGTCCCTTTAACAGGTTTAAACAAGAGTCATGTTGAGGTTTTATCTTTT CATCCGTGTGCTCAAGTTCCAGAACATGGCATGGATAAGCAGAGTGTGATGTTTTCACCTCCAATGGGCAATTTTGTTCTAGTCCGTTATCAGGCAAGCT GTAGGCTGGACCCTCTTGTAAAAGGATTTTACCAGCTATCAATGGTCTCAGAAGATGAAGGTGCATTTTTGTTCAAGCTGGGCTTAATGGGAGGTTACAA GAGTCCCTTCACAATTGAGTTCTGTACTGTGATGATGCCATTTCCAAGGAGGAAGGTTGTATCTGTTGAGGGGACCCCCTCTATTGGGGTTGTTTCAAAC ACTGAGCACTCCATTGAATGGAAAATCATTGCAAGTGGTCGGAGTCTCTCTGGGAAAAGCATTGAAGCAAGTTTCCCTGGGACGGTTAAATTTGCACCCT TTCAACCTCAGAGGCTACCATCATCTAGGCCTGGGTCTCAGAGCATAGCTGATGAGGACAGTGATGTTGAGGCAGATAATACAAACAATATGGTGAATGT GGATGAATTCTTGATGGAGAAAATGAATAAGGATCTTCCTCCAGCTGACCTGGAAGAACCTTTTTGCTGGCAAGCATACAACTATGCTAAGGTATCTTTC AAGGTCAATGGGTCCTCATTGTCTGGAATTTCTATTGATCCGAAATCTGTGAGTTCGATTCCAAACCCTTATGATTGTTAG
AA sequence Show only first row Show all	>Lus10012764 pacid=23142359 polypeptide=Lus10012764 locus=Lus10012764.g ID=Lus10012764.BGIv1.0 annot-version=v1.0 MRGHNWINTLLPDEIILEIFNRLDSKQARDSCSVVCKRWLTLERLSRTTLRIGASGNPDFFIHLLCTRFPNVKTIHIDERLSISLPVQLGRKRRKGINES YFKLHSMFQEDLPDSEQFDSFCLSDVGLITLSDQFPALEHLSLIWCSNVSNLGLISLALKCSLLKSLDLQGCYVGDGGLAAVGKCCKQLEELNLRFCEGV SDVGLTELAEGCGISLKTLGVAACAKITDKSLEAVGSHCKSLETLSLDSEFIQNDGVLAIAKGCRHLKVLKLQCINVTDEALIEVGKYSSSLEVLALYSF QRFTDRGLFAIGDGCKKLKNLTLSDCYFLSDQGLGSIAMGCKELTHLEVNGCHNIGTLGLEAIGRSCTRLTELALLYCQRVGDNALHAIGKGCKSLEALH LVDCSSIGDDGICSIAKGCTNLKKLHIRRCYEVGNKGIIAVGENCKSLEDLSLRFCDRVGDDALVSVGQCHSLQTLNVSGCHQIGDTGITAIARGCPELS YLDVSVLQNLGDMALAELGEGCPALKEMVISHCRQITDVGLSHLARNCEMLESCHLVYCPGVTAAGVATVVSGCQNIKKVLVEKWKVSERTKRRAGSVIS YLCIDLEQVTEAVPPEQKQRSGSHKAMPGGCSIRALWILNSFDTVVFSRRFPVVEKRWKAACKIEGISSSVEDLVKCALVPILPNDSELAAAFAERKRRE GSTRGFGIRVVQSTQGSDSWVDDPITRHIISLRIGAEEEEDKELLWPLILHLKGPYTMLVLPLVEPKHLKAYGKMCTNPSCGDAVGEEASLSSLLLDLPS ITGAFMVAHAVGDIVTGDMVEPEVLVSASPSVGGLLDSLTGSIGITGIAARAKPVATPVAAATPLGTAAIGSVALDAPGSRPLDKDALQNFISNAMPFGT PLDLNYLNIFAIKANGFTSSDLPPADLKQPAWKPYLYKGKQRILFTIHETIHAAMYDRDDISDTMSVAGQINCRAELDGLPDVSVPLTGLNKSHVEVLSF HPCAQVPEHGMDKQSVMFSPPMGNFVLVRYQASCRLDPLVKGFYQLSMVSEDEGAFLFKLGLMGGYKSPFTIEFCTVMMPFPRRKVVSVEGTPSIGVVSN TEHSIEWKIIASGRSLSGKSIEASFPGTVKFAPFQPQRLPSSRPGSQSIADEDSDVEADNTNNMVNVDEFLMEKMNKDLPPADLEEPFCWQAYNYAKVSF KVNGSSLSGISIDPKSVSSIPNPYDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15475			F-box/RNI-like superfamily pro...		Lus10012764 [exp]	0	1
AT1G23230			unknown protein		Lus10016701 [exp]	1.7	0.9041
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	2.4	0.8890
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	4.6	0.8521
AT1G23230			unknown protein		Lus10035997 [exp]	6.9	0.8745
AT5G55060			unknown protein		Lus10021546 [exp]	8.8	0.8865
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	11.4	0.8670
AT5G22450			unknown protein		Lus10020607 [exp]	13.3	0.8339
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	16.2	0.8239
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10033243 [exp]	20.2	0.8444
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	21.0	0.8258

Compare expression of checked genes

Lus10012764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.