Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06260 517 / 0 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT4G02130 421 / 4e-148 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G13250 419 / 2e-147 GATL3 galacturonosyltransferase-like 3 (.1) AT1G02720 418 / 9e-147 GATL5 galacturonosyltransferase 5 (.1.2) AT3G62660 408 / 1e-142 GATL7 galacturonosyltransferase-like 7 (.1) AT1G70090 407 / 9e-142 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT3G28340 402 / 4e-140 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT1G24170 400 / 4e-139 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G50760 389 / 1e-135 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 381 / 2e-132 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034012 [exp] 653 / 0 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10041489 [exp] 425 / 2e-149 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10034274 [exp] 421 / 6e-148 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10002440 [exp] 413 / 1e-143 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10010727 [exp] 396 / 4e-138 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10032728 [exp] 396 / 6e-138 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 395 / 1e-137 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016301 [exp] 395 / 1e-137 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10029215 [exp] 392 / 4e-136 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018100 [exp] 518 / 0 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.010G242300 [exp] 487 / 5e-174 AT3G06260 524 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.010G129400 [exp] 451 / 1e-159 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G116900 [exp] 438 / 1e-154 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.002G200200 [exp] 416 / 8e-146 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G125000 [exp] 410 / 2e-143 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.007G031700 [exp] 404 / 2e-141 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.010G038300 [exp] 401 / 9e-140 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.014G040300 [exp] 398 / 1e-138 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G128000 [exp] 395 / 1e-137 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10012765 pacid=23142325 polypeptide=Lus10012765 locus=Lus10012765.g ID=Lus10012765.BGIv1.0 annot-version=v1.0 ATGGCCTTGATTTGGAGCTTTTCTTCTCTTCTAGGCCTCCTGTCTCTCCTCTTCCTCGTTCTCTCCTCTTCCCCCGCCACCATCGCTGATGCCGCCGCCA ACAGACCATCTTCCTCCCTTAAACTCACATCCTTTCGAGAGGCGCCGTCGTTTCGGAATGGGGATCAATGCAGACCAACAAAGATTCACGTTGCAATGAC CCTCGACATCAATTACCTCCGGGGCACAATGGCAGCCGTCCTGTCGATGCTCCAACACTCCACCTGCCCTGAGAATCTATCTTTCCATTTCCTCTCTGCT CATTTCGAGCCCGAGCTCTCGTCCAGCATCAACCAGACCTTCCCTTACCTGCCCTTCCGGATATATCACTTCAATCCAAACAGGGTCAGGGGTAAAATCT CTCGGTCCATCCGACAAGCCCTGGACCAGCCATTAAACTACGCCCGCATCTACCTGGCCGACATCCTCCCCCAGGACGTCGACAGGGTCATCTACTTCGA CTCAGATATCATCGTGGTCGACGACATTGGCAAGTTGTGGAACGTCGACATGGAAGAAAGAGTTGTGGCAGCGCCAGAGTACTGCCATGCAAACTTCACC CCGTATTTCACAGACCGGTTCTGGTCAGACGGAAAGCTGGCGGGCACGTTTGAGGGGCGGAGGCCGTGCTACTTTAACACGGGCGTGATGGTGATGGACG TGGAGAAGTGGAGGGAAGGAAGGTACACGACGAGGGTAGAGGAATGGATGGCGGTGCAAAAGAGAGAGAGGATATATCACCTAGGGTCATTGCCGCCGTT CTTGTTGGTGTTGGCCGGGAACATTAAGCCGGTGGATCACCGGTGGAACCAACACGGACTGGGAGGGGATAACTTCGAAGGGAGGTGTAGGAATTTGCAT CCGGGTCCGATAAGTCTATTGCATTGGAGCGGGAAAGGGAAGCCATGGCTAAGGCTTGATTCCAGGAAGCCGTGTATTGTGGATTATTTGTGGGCTCCTT ATGATCTTTACCGTTCCTCCAAGCATGCTTTGGAAGAGTGA
AA sequence Show only first row Show all	>Lus10012765 pacid=23142325 polypeptide=Lus10012765 locus=Lus10012765.g ID=Lus10012765.BGIv1.0 annot-version=v1.0 MALIWSFSSLLGLLSLLFLVLSSSPATIADAAANRPSSSLKLTSFREAPSFRNGDQCRPTKIHVAMTLDINYLRGTMAAVLSMLQHSTCPENLSFHFLSA HFEPELSSSINQTFPYLPFRIYHFNPNRVRGKISRSIRQALDQPLNYARIYLADILPQDVDRVIYFDSDIIVVDDIGKLWNVDMEERVVAAPEYCHANFT PYFTDRFWSDGKLAGTFEGRRPCYFNTGVMVMDVEKWREGRYTTRVEEWMAVQKRERIYHLGSLPPFLLVLAGNIKPVDHRWNQHGLGGDNFEGRCRNLH PGPISLLHWSGKGKPWLRLDSRKPCIVDYLWAPYDLYRSSKHALEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10012765 [exp]	0	1
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10033420 [exp]	7.6	0.8472
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10004156 [exp]	9.1	0.7257
					Lus10033246 [exp]	10.1	0.7142
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	11.2	0.7859
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	11.6	0.8415
AT3G21570			unknown protein		Lus10012773 [exp]	12.4	0.8281
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	13.9	0.7620
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	19.9	0.7865
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	23.7	0.8034
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	29.3	0.7847

Compare expression of checked genes

Lus10012765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.