Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21480 50 / 1e-07 STP12 sugar transporter protein 12 (.1) AT1G07340 47 / 2e-06 ATSTP2 sugar transporter 2 (.1) AT4G02050 47 / 2e-06 STP7 sugar transporter protein 7 (.1) AT1G11260 44 / 2e-05 ATSTP1, STP1 sugar transporter 1 (.1) AT5G23270 42 / 7e-05 ATSTP11, STP11 sugar transporter 11 (.1) AT5G26340 41 / 0.0002 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT1G77210 41 / 0.0002 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT3G19940 41 / 0.0002 Major facilitator superfamily protein (.1) AT5G61520 40 / 0.0005 Major facilitator superfamily protein (.1.2) AT3G05960 39 / 0.0008 ATSTP6 sugar transporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028729 [exp] 132 / 3e-39 AT3G19940 62 / 1e-11 Major facilitator superfamily protein (.1) Lus10012596 [exp] 74 / 7e-17 AT1G11260 65 / 2e-12 sugar transporter 1 (.1) Lus10002597 [exp] 49 / 7e-07 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10018422 [exp] 49 / 7e-07 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10040991 [exp] 48 / 1e-06 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10022421 [exp] 44 / 2e-05 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10020934 [exp] 42 / 9e-05 AT1G34580 664 / 0.0 Major facilitator superfamily protein (.1) Lus10019070 [exp] 41 / 0.0002 AT4G02050 538 / 0.0 sugar transporter protein 7 (.1) Lus10013441 [exp] 41 / 0.0002 AT1G50310 731 / 0.0 sugar transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033600 [exp] 49 / 3e-07 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.016G120700 [exp] 49 / 5e-07 AT5G61520 570 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G110400 [exp] 48 / 7e-07 AT1G11260 658 / 0.0 sugar transporter 1 (.1) Potri.004G101950 [exp] 48 / 9e-07 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G101900 [exp] 48 / 9e-07 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 47 / 2e-06 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.004G109765 [exp] 47 / 3e-06 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G110630 [exp] 47 / 3e-06 AT1G11260 629 / 0.0 sugar transporter 1 (.1) Potri.007G073850 [exp] 46 / 5e-06 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 46 / 5e-06 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012766 pacid=23142333 polypeptide=Lus10012766 locus=Lus10012766.g ID=Lus10012766.BGIv1.0 annot-version=v1.0 ATGCTCATAGCAGAACATGTCGTCTTTGCTTGCATCGGAGTAGGCTTCTCCGTCCAATCCACGCAAGCCTACGCAGCTCGGAACCCATCCATTTGTTATC CCATAATCAAACGAGTTTTATCAGTCTGCGGTATTCGTCAGGCAGGGGCCGTGGCGCATGAGTCTAGGAGTAGCGTGCCTCTTGTGCACCTTCTCTTCAT CATCGGCCTTCCCAACGCACCAGAAGATGTACACGCAGAAGATGAGTCTCCAGATATTAAAGTCGCTGCCAACGTGGCAACCGGGTTAGCAACAACATGC CCCAACATCAAGCCACGTCATCCTAGTCACTACCTAGTGGCGGCGCTGGCAGTCCCGTTGTTAATGCAGAAGTTGACCGGAGTCAACCTTGTGTTGATGT TTTATGCTCCGGTACTTTTCCAAACCATCGTCCCGGGCTGCAACTCCTCCTTGGTTTTCTCTGTCAATTTCCGTTATGCCTTGTGTTTTTGTTTAGGGAC TCTCGCTTCTTAG
AA sequence Show only first row Show all	>Lus10012766 pacid=23142333 polypeptide=Lus10012766 locus=Lus10012766.g ID=Lus10012766.BGIv1.0 annot-version=v1.0 MLIAEHVVFACIGVGFSVQSTQAYAARNPSICYPIIKRVLSVCGIRQAGAVAHESRSSVPLVHLLFIIGLPNAPEDVHAEDESPDIKVAANVATGLATTC PNIKPRHPSHYLVAALAVPLLMQKLTGVNLVLMFYAPVLFQTIVPGCNSSLVFSVNFRYALCFCLGTLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21480		STP12	sugar transporter protein 12 (...		Lus10012766 [exp]	0	1
AT2G21100			Disease resistance-responsive ...		Lus10034473 [exp]	5.7	0.8762
AT4G33985			Protein of unknown function (D...		Lus10027898 [exp]	7.3	0.8757
					Lus10017290 [exp]	10.8	0.8266
AT2G15220			Plant basic secretory protein ...		Lus10001358 [exp]	13.2	0.8146
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10030271 [exp]	13.8	0.6272
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	17.9	0.8176
					Lus10013963 [exp]	20.5	0.8137
AT2G23660	AS2	LBD10	LOB domain-containing protein ...		Lus10009337 [exp]	21.1	0.5523
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009400 [exp]	23.8	0.8108
AT1G76520			Auxin efflux carrier family pr...		Lus10013200 [exp]	26.4	0.8085

Compare expression of checked genes

Lus10012766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.