Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26210 386 / 1e-129 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT1G13110 383 / 2e-128 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT5G25140 375 / 1e-125 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26310 370 / 3e-123 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26280 369 / 1e-122 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT3G26300 366 / 7e-122 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G25180 365 / 1e-121 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT5G25120 365 / 1e-121 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26320 365 / 2e-121 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT1G13080 365 / 4e-121 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030708 [exp] 677 / 0 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 655 / 0 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10002885 [exp] 515 / 1e-179 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10042815 [exp] 513 / 4e-179 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 506 / 4e-176 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10018263 [exp] 505 / 6e-176 AT5G25140 393 / 5e-132 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) Lus10026252 [exp] 509 / 4e-172 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10029035 [exp] 495 / 7e-172 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10028926 [exp] 487 / 4e-168 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075000 [exp] 501 / 2e-174 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 497 / 6e-173 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 491 / 1e-170 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 485 / 2e-168 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 482 / 6e-167 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 470 / 2e-162 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 467 / 4e-161 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 451 / 4e-155 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 439 / 3e-150 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.012G089900 [exp] 425 / 1e-144 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10012767 pacid=23142341 polypeptide=Lus10012767 locus=Lus10012767.g ID=Lus10012767.BGIv1.0 annot-version=v1.0 ATGGAGGCAGAATGGGCTTGTATTCCTCTGCTCTTATTACTGGGATACCTCGGGAAGAGGTATCTCCTAAACTGCGGAAGATCATCGGCACCTGGGCCGT GGAGGCTACCTTTAACCGGTAACCTCCACCAGATGGCGATCATGAGCCATAGGGGTCTGGAGACCCACCAAGCACTAAGGGAACTGGCCCGGAAATACGG GCCCGTCATGAGGCTCCAGCTGGGCGAGCTCTCCCACGTGGTCATTTCCTCGGCAGAGGCAGCAAAGCAGGTTATGAAAACCCACGACGTCAACTTCGCA TCGAGGCCGTTCCACTTGGCGTCAAGCATCATATCCTACGGCCGCCAGAACATCGCATTCGCACCTTACGGCGAGTACTGGAGGCAGATGCGTAAAGTCT GCATCGTCGAGCTGCTCAGCGCCAAGCGCGTAGCTTCTTTCCGGTCCATACGGGAAGACGAGGAGTCCAAGATGGTGGAGCAGTTGGCCAAGTCAATGAG TACTGAATCTCAATCCGAGGGAGTCAATCTGAGGAAGATGTTGGTTACGTTATCCAGTAATGTGACTTCCAAGGCAGCTTTCGGAATGGTTCACGAGGGG AACGAAGCGTTCATGGGTGTTGTTGAGAAGATTGTGGACTCGCATGCTGGATTCAGGTTGTCGGATATCTACCCTTCGGTAAAGTTGCTTCCGATCATTA GTGGGTTCCGGTCGAAGCTCGTGTCGCTTCACCATGCTGTGGATGCTATGCTTGAGGACATCATCAACCAACATAGAGCTGCTAGAAAACAGACTAGTAC TGATCAAGAAAAAACAGAGGACATTGTCGACATTCTACTCAATCTTCAAGAAACAGGGGATCTCTCTATCCCCTTGACTATGGACGCCATGAAAGCCGTC ATTCTTGACTTGTTTATTGGTGGTATTGAGACATCAGCCACGACGATCGAGTGGACATTTTCCGAGATAGTAAGAAACTCGAGAGTCCTAAAACTAGCCC AAGAAGAAGTGAGGCGAGTGTTCGGCGAGAAGGGAAATGTCCATGAGGACAGCCTCCACGAGTTGACTTACTTAAACGCATGCATCAAAGAGAGTCTTCG AATGCACCCTGCGGGTCCTCTGCTTCTTCCACGAGAAACCGGGGAGACAGTGACAGTGGACGGGTTCGAGGTGCCTGCCAAGACCAGGGTCATGGTCAAT GTATGGGCTATTGGAAGAGACTCTCGTTATTGGGACGATCCTGATACCTTCTCTCCCGAGAGGTTTCTCGACTCGTCGCTGGACTATAAAGGAACCCACT TCGAGTATATACCGTTCGGTGCTGGAAGGAGGATTTGTCCTGGTATGTCCTTTGGAATGGCTCTGGTTCAGGCGACGCTTGCGAATCTGCTGTTTCACTT TGACTGGACGCCACCGGCCGGAGTGTCCAAGCTGGGAGACTTGGATATGACGGAACACTTTGGCATCGCGCTTGCGAGGAAGGAAATACTACGCCTCGTC CCTGTAGCTCCACCTCCTCGGAATGCGTAA
AA sequence Show only first row Show all	>Lus10012767 pacid=23142341 polypeptide=Lus10012767 locus=Lus10012767.g ID=Lus10012767.BGIv1.0 annot-version=v1.0 MEAEWACIPLLLLLGYLGKRYLLNCGRSSAPGPWRLPLTGNLHQMAIMSHRGLETHQALRELARKYGPVMRLQLGELSHVVISSAEAAKQVMKTHDVNFA SRPFHLASSIISYGRQNIAFAPYGEYWRQMRKVCIVELLSAKRVASFRSIREDEESKMVEQLAKSMSTESQSEGVNLRKMLVTLSSNVTSKAAFGMVHEG NEAFMGVVEKIVDSHAGFRLSDIYPSVKLLPIISGFRSKLVSLHHAVDAMLEDIINQHRAARKQTSTDQEKTEDIVDILLNLQETGDLSIPLTMDAMKAV ILDLFIGGIETSATTIEWTFSEIVRNSRVLKLAQEEVRRVFGEKGNVHEDSLHELTYLNACIKESLRMHPAGPLLLPRETGETVTVDGFEVPAKTRVMVN VWAIGRDSRYWDDPDTFSPERFLDSSLDYKGTHFEYIPFGAGRRICPGMSFGMALVQATLANLLFHFDWTPPAGVSKLGDLDMTEHFGIALARKEILRLV PVAPPPRNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	0	1
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	1.0	0.9744
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	1.4	0.9534
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001118 [exp]	3.5	0.9257
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000426 [exp]	3.7	0.9256
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002892 [exp]	3.9	0.9310
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	4.0	0.9224
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10016334 [exp]	4.5	0.9391
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004441 [exp]	8.5	0.9060
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	9.3	0.9469
AT1G47670			Transmembrane amino acid trans...		Lus10023971 [exp]	15.3	0.8354

Compare expression of checked genes

Lus10012767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.