Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06270 501 / 6e-178 Protein phosphatase 2C family protein (.1) AT2G20050 398 / 1e-128 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) AT5G27930 125 / 5e-32 Protein phosphatase 2C family protein (.1.2) AT5G10740 119 / 7e-30 Protein phosphatase 2C family protein (.1) AT3G05640 115 / 2e-28 Protein phosphatase 2C family protein (.1.2) AT5G26010 109 / 1e-26 Protein phosphatase 2C family protein (.1) AT4G31750 108 / 2e-26 WIN2 HOPW1-1-interacting 2 (.1) AT4G32950 108 / 2e-26 Protein phosphatase 2C family protein (.1) AT5G24940 110 / 3e-26 Protein phosphatase 2C family protein (.1) AT5G01700 108 / 3e-26 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034009 [exp] 868 / 0 AT3G06270 506 / 5e-180 Protein phosphatase 2C family protein (.1) Lus10041242 [exp] 624 / 0 AT3G06270 508 / 1e-180 Protein phosphatase 2C family protein (.1) Lus10021952 [exp] 578 / 0 AT3G06270 447 / 2e-157 Protein phosphatase 2C family protein (.1) Lus10034955 [exp] 377 / 1e-120 AT2G20050 1472 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10012976 [exp] 289 / 6e-89 AT2G20050 1269 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10029874 [exp] 125 / 1e-31 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 123 / 3e-31 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10015206 [exp] 114 / 5e-28 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2) Lus10026239 [exp] 110 / 2e-27 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028300 [exp] 558 / 0 AT3G06270 498 / 4e-177 Protein phosphatase 2C family protein (.1) Potri.008G198700 [exp] 545 / 0 AT3G06270 481 / 1e-170 Protein phosphatase 2C family protein (.1) Potri.018G084900 [exp] 388 / 5e-125 AT2G20050 1461 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Potri.013G012200 [exp] 118 / 2e-29 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 114 / 4e-28 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G267600 [exp] 109 / 8e-27 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 109 / 9e-27 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.016G127900 [exp] 111 / 2e-26 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 110 / 4e-26 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.018G059800 [exp] 108 / 5e-26 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10012768 pacid=23142350 polypeptide=Lus10012768 locus=Lus10012768.g ID=Lus10012768.BGIv1.0 annot-version=v1.0 ATGGGTTGTGTGCACGGAAAGTGCTGTAGCCATTACTCGCCGTCGTCGTCAGACGGAGGAGATTTGAGGGATTACCGACATATTGGCACTGGGAGAAAAA GCAACAAGCACTTGCTTACACAGAAGCCTCTGGAAACCGTCTCTGTTCCTTGCCGGAGCTTCAATTTACTCTACTCAGTTCTGACTCAGAGGGGTTACTA TCCTGACCAGCCAGACAAGGAGAACGAGGACTGTTACGCCATCAGGACAAACCTCCAAGATAATCCGGACGTTCATTTTTTTGGTGTGTTTGATGGGCAC GGCCAGTTTGGTGCCAAATGTTCTAATTTCGTCAAGAATAGGCTGGTTGAGATACTAGCAAACGATCCTACTCTGTTAGATGACCCCATTAATGCTTACA ATTCTGCATTTGCAACGACGAATTCCGAGCTGCATACCAGCAGTGATATTGATGATACGATGAGTGGGACGACTGCAATCACTGTCCTTGTTGTCGGGGA TAAGATCTATGTCGCCAATGTGGGCGATTCGAGGGCTGTGATGGCTGTTAAGAAGAAGAGGAATACTCATAGGGTTGTGGCTGAGGATTTGTCTTGTGAT CAAACACCGTTTAGGAAAGATGAGTGTGAAAGGGTTAAGCTTTGTGGAGCTAGAGTGTTGAGTGTTGATCAAGTGGAAGGGCTTAAGGATCCGGATGTGC AGTCGTGGGGTGACGAGGAAAGCGATGGAGATGATCCTCCTAGGTTGTGGGTGCAGGATGGCATGTACCCTGGTACGGCATTTACGAGAAGTGTAGGTGA TAATACTGCCGAGAGGATCGGTGTTATCGCTGAGCCGGAGGTGTCTGTGGTTCAGCTTACTCCTAACCATTCCTTCTTTGTCGTGGCTAGCGATGGAGTT TTCGAGTTCCTGTCCAGCCAAGTCGTCATTGATATGGCTGCAAGATATGGAGACCCTCAAGATGCATGTTCTGCAATTGCCGGAGAGTCGTGCAAACTTT GGCTGGAACATGAAAATCGCACCGATGATATTACAATCTTAATCGTCCAGATTAAAGACTTGATTAGCCCAGATGGGAGTGCAACGAATGGAACCACTGT GACTAATAAAGGTGTAGCCAGTGCAAAACAAAGCAATGGATCTGCCGATCTTAATATCAATGCAAACTTGGACTTCTCGGACGTGCAATGTCCAGACAGC CGAAGACAAGTTGTTGTTCCGGATCCACATCGGAAGCCCTTTGAGATGGTTGGTGCTTCATTGTTTTCTTCAAGCTGGGTTTACAATTGTTTCCTTTCAG TTCTTATGGCTTACTGCTACACCCCCTTGAGATAG
AA sequence Show only first row Show all	>Lus10012768 pacid=23142350 polypeptide=Lus10012768 locus=Lus10012768.g ID=Lus10012768.BGIv1.0 annot-version=v1.0 MGCVHGKCCSHYSPSSSDGGDLRDYRHIGTGRKSNKHLLTQKPLETVSVPCRSFNLLYSVLTQRGYYPDQPDKENEDCYAIRTNLQDNPDVHFFGVFDGH GQFGAKCSNFVKNRLVEILANDPTLLDDPINAYNSAFATTNSELHTSSDIDDTMSGTTAITVLVVGDKIYVANVGDSRAVMAVKKKRNTHRVVAEDLSCD QTPFRKDECERVKLCGARVLSVDQVEGLKDPDVQSWGDEESDGDDPPRLWVQDGMYPGTAFTRSVGDNTAERIGVIAEPEVSVVQLTPNHSFFVVASDGV FEFLSSQVVIDMAARYGDPQDACSAIAGESCKLWLEHENRTDDITILIVQIKDLISPDGSATNGTTVTNKGVASAKQSNGSADLNINANLDFSDVQCPDS RRQVVVPDPHRKPFEMVGASLFSSSWVYNCFLSVLMAYCYTPLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06270			Protein phosphatase 2C family ...		Lus10012768 [exp]	0	1
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	2.0	0.8660
AT4G21900		PRORP3	proteinaceous RNase P 3 (.1)		Lus10043379 [exp]	11.7	0.8443
AT5G18260			RING/U-box superfamily protein...		Lus10020256 [exp]	13.3	0.8288
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	15.4	0.8440
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	18.0	0.8131
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	20.1	0.8447
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	23.4	0.8317
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10027728 [exp]	27.7	0.8108
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10025329 [exp]	32.6	0.8272
AT3G48120			unknown protein		Lus10004240 [exp]	40.0	0.7496

Compare expression of checked genes

Lus10012768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.