Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06290 458 / 5e-135 AtSAC3B yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) AT3G54380 171 / 8e-46 AtSAC3C yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) AT2G39340 59 / 3e-08 AtSAC3A yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034008 [exp] 2781 / 0 AT3G06290 1093 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10024110 [exp] 159 / 1e-41 AT3G54380 412 / 1e-142 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Lus10041609 [exp] 140 / 5e-35 AT3G54380 429 / 3e-149 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Lus10001973 [exp] 61 / 1e-08 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10030305 [exp] 59 / 5e-08 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028200 [exp] 1391 / 0 AT3G06290 1155 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.001G035700 [exp] 165 / 1e-43 AT3G54380 457 / 3e-160 yeast Sac3 homolog C, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1.2.3) Potri.008G047700 [exp] 60 / 2e-08 AT2G39340 880 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.010G213700 [exp] 58 / 5e-08 AT2G39340 845 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Lus10012769 pacid=23142376 polypeptide=Lus10012769 locus=Lus10012769.g ID=Lus10012769.BGIv1.0 annot-version=v1.0 ATGTCCTCTTTTGGGAACGGGGCGGGGCCCTTCGATCCGCGAGCTTCCGGCAGAGTTTTATTCGGTATTTCGACATCTCAGGCACTGCGATCGCCTCAAC TTTCGCCTGTACGATCACCAAGCATATCTGAAGTACAAGGACCACAGTCTCGTTCGTTGGGCTTTGATAGTTCTCCCACTCTTGCAAGTCATCCCTCTTT CACAGCTAGGCCACAGATGACTATTGAGTCTCCTCCTACTTGGAGTAATGGACACCAGTCTTTCATGAAAGATGATGACTGTGAAGATCCTGTGCCTTAT GGTACAAAATCTCTTGTTGTTACTCGTAATTCTGGAACCACAGTGGCTGCTAGGGTTGGTGGTATACAAGACCAGAAACGGACTAGATCACCACCTCATT CTACCAATGGAACCACTGCACAAGATTCGAGTTTAAGTTTCCCTCAAAGGCCTTCTGATTTGCCTGTTCACAATGCAAATCCCTTTGTCAAAACAAACAC CCCTCCGTTGGCTTTTCAGAAGAATCCCAATGCACATGCCCGTCCTTCATTTGGTGCAGGTCAAAGTGCTGCTTATTCTTCACCGGCATGGGATGGAAGT TCCAGTATGGAAGGCCATTTTCAAGACTTGGGTAGTCGTAAAAAATTGTCCCCAGGTCAAGTTAATGATGTTAGAAATGGCAATCTCCCGAAGCGCAGTA GGTCGCCTCCCGTGAGTGGAAGTTGGCAGGAAAATCCTCCTGTAGAAAACGGAGCTAAAAGACCTTTCTCTCCACTAGGAATGGAGACTCAGTCAGATGC TTTTCGCGTTACCTCAGACCCGCAAACTTCCCAACGAGTGCTGCCATCTATGAGGAATGAAGCTGTGAAATCTATTCCCGTCAGAAACGCCAGTGACGAT GTTTCAAAGAGAACTAGGTCATCCAATATTCCTTCTGATAAGGTTCTCCTGGGAACCTCATTTTCATCAGCTGATGATGCTGAGCGAGAGATACACGCCA AGGAAAAGCGTTTAGCTCGCTTTAAGGAAGAATTAACCGAAGATTCTAAAAATAGCATTGGTATTGGGGACCGAGACATTCCCGTTGAGTCTGAAAGGGC AGAACGAGAAAGGAAAGGGGATCTTGACCAGTATGAAAGGTTGGACGGGGATAGAAATCAAACAAACCGCTTCCTTGCTGTTAAGAAGTACACTAGGACA GCAGAGAGGGAAGCATATCTTATACGTCCAATGCCTATCCTGCAAAACACCATTGAGTACCTACTTAGTTTGCTGGATAAACCATACAATAGCGAGTTCC TGGGGAAATACAACTTCCTGTGGGATAGGATGAGAGCAATACGGATGGACTTGAGGATGCAGCACATTTTCAATTTGGAAGCTATAACTATGTTGGAGCA AATGATAAGACTTCATGTAATTGCCATGCATGAACTGTGTGAATATACAAAAGGAGAAGGTTTTTCAGAGGGATTCGATGCACATCTTAATATTGAACAG ATGAACAAAACATCGGTCGAACTGTTCCAAATGTATGACGATCACAGGAAGAAAGGAGTTAATGTGCCCTCGGAAAAAGAATTCCGTGGGTACTATGCGC TTCTCAAACTAGACAAGCATCCTGGATACAAGGTGGAACCTTCGGAGCTCTCACTAGATCTTGCAAAGATGACTCCAGAGATAAGGCAAACTGCTGAAGT ACTTTTCGCTCGTGATGTAGCAAGGGCTTGTAGAACCGGCAATTTCATTGCCTTTTTTAGGCTGGCGAGGAAAGCGACTTACCTTCAAGCGTGTTTAATG CATGCTCACTTTGCTAAGCTACGGACCCAGGCACTTGCTTCTTTGTATTCGGGTCTACAAACTAAACAAGGAATCCCTGTTTCTCATGTTGCAGAGTGGC TTGCTATTGAGGGAGAAGATGTTGACAACTTATTAGCATACTATGGCTTCTCAATAAAGGAATTTGAAGAGCCATATATGGTGAAGGAGGGACCTTTTCT CAACAGTGACAAGGACTTCCCAACAAAGTGCTCCAGACTTGTTCACCTAAAAAAATCAGCTATGATTGTTGGAGATGTTTCCTCGTCTTCTCAGGAGACA TCACTGCCTGAACGAACAAGAAAACTTGAAGTTCCTTCAAACTTCAGACTTGATACAAAAAGTACTCCAGCTTCTGTTGATAAGAAGAGACCAATCCACG TGATTGACGAAATGTCCACTCTTCAAGCTGTTCCATCACCAAAATTTGGCAAGCAGAAACAGCGTGTTATTGGTAGATCTGAGGTTGAACAAGTGGACAC AGAAAGAAATCACGTGACAAGTGCCTCTATTGCACCATGGACCTTTACTACGGATCATAGTGCCCAAAATAGTCTGCCAGTCGTTGTTGGAGTACCAGAG AAAAGAAGAACGGATTCTCCTTTCCCGATCATTCCCGATCTGCATGCTACTCATAAGATAGAGGCCATGCCTCTGCAACCAGGGTTTAGGATGCCGTTGA AAGAGGACCTTTCTAGTGTGGAGAAAGACAACCAGACGGATAATATAATCTGTCAGATCATACCAACCAATCCATCAAAAGACGAGGAACCTCCTGATGT TGATCAAGAACATAAAAGTGACGAGTTAATGGAGAATTACATAGATGAAGAAGTTGCTGAAGCGAAACTCAAATTGATCATACGGTTATGGAAGCGGCGT GCCTCAAGGCATAAGGAGTTACGCCAACGACGGAAAATGGCTGCAGATGCTGCGATTAGCTCATTATCACTGGGACCGCCGATTCAAATGATCCAAGAAC AACCCAGCAACAATCTTGAGTTCGACATTAACCATATCATGCGGGAGAGATGCAGAATATACAAGCAGTCGTGGTCGAAGCTGAATTTATCTGAAGTCAT TTTAAACGAGGTTGCCGCAAGAAACCCAGATGCCAAATGTCTCTGTTGGAAACTAGTCTTATGTTCTCAGGCAGAGGAAGGTGACCAACGGGGTTCCAAC AGCCATCTTAGCCATGCAACTGCAGGCCCTTGGTTGTATTCAAAACTAATGCCTGGTAAGCAGAAGGATAAGGATGATGATGAACTGCTAGTTTCGTCTC CAGGCCTTTCAATATGGAGGAAGTGGTTTCCAGGCCAGACTAGAAATGAGCCAACCTGCTGCTTCTCAGTCGTTAGGGATTCCAGTTTTTGTAGTCTGAA TGAGTCGGTAGCTGGTGCAAGTGCTGTGCTTTTCGTTGTCTCGGAAAACATCCCGATGAGTGTGCAGAGAATCAAACTTCATAATCTCATCATGGCTATA CGTCCAGGCTCTTCATTGCCTCTACTGGTCTTTTCTGGCAAATCTGATGGAAAGTTTTCAGATCCTTTCTCTGTCATAGTCGGTGAGCTGGGACTGAATA CCGTTGACAAGTCAAAGATACAAAGCTTTTCTGTACTATTCCTTGTTGGAAACGAAGTAAGAGAAGATTCCAATGGATTTTTCAGTGATGGAAGGGTGAG AGAAGGATTAAGGTGGTTGGCTAGTGAATCACCCGTACAACCTGATCTTGAGTACATAAAAATGTCAGAACTGCTTCTCACAAGGTTGAGACCATCTCTA GATGCCCTTGAAAGTACGAGTGATCCTGAAGTTGGTCAAAACACTTGTATATCAGCTTTCAATGAAGCTTTGGACTGGTGTACAGAGGAAATTTGTGCTG CTGCCAGAGCCAATGCGATCAGTTGGCCTTGCCCGGAGTTGGTTTCACTGGATGATTTTCCTAGTGAGAGTATGGTGATTAAGTCATACTTGCCAAGCAT AGGATGGAGCGAAGCATCAGCAACTGATCCACTTGTATCGGCTGCACGGAAATGTAAACTTCCCAGCTTTTCTGATGATGTATCCTGGTTAGATGAAGGC ACAACCATCGGTGACCAGCTTGGGAAACTAACTTCTGATCTTGAAAGTAGTTTGACGAGGTACCTGACTGAATCAAGCGGAATGATGGGATTTCAGCTGG CGGCAAAGGAGGCACATGTTATTTTACAAAAAAGCGCCCATCTTGAGATCCGGGATGCAACCTATCATATCATTGTAAATTGGGCCAAAATGTTCAGGCG GATTTTCAATTGGCAGCTTGGTAAGCTATCGTCGTCGGTCTACATTTTAAGCTCTCATCTTGTGGATTCAACATCATGGCTTCTGGTTAAGTCTGGATCT GGAGGAGATGCTTCGTACCCTTATTTCAATCAACTTTCTTTGGATCAAGTCATTCATGTTGGCTCTATTCCTCTGCTGTTGAAGAGGAATCGCCCAAAAC CATACGTTTCCTTGCCAGCATCAATTTCTTCTTTGAGCCCCCCAGATGATGATGTTTTGGCCACTATGAGGCCGGTTACCTGGACAATAACCGATGAAGA AGCTTCTTCTTCACAGATAGGGGGTTTAGGTGTCGTAGGAGATCGAGAAAGACGAGTTGTGGCCAAGACACCACAAATTCCCCAGAAAAGTAGCAAGGAG GGTGATAAATTAAGCAGGTTATTGGAGCAGTGTAACATTGTGCAGAACAGGATAGAAGAAAAGCTTTCCATTTACTTTTGA
AA sequence Show only first row Show all	>Lus10012769 pacid=23142376 polypeptide=Lus10012769 locus=Lus10012769.g ID=Lus10012769.BGIv1.0 annot-version=v1.0 MSSFGNGAGPFDPRASGRVLFGISTSQALRSPQLSPVRSPSISEVQGPQSRSLGFDSSPTLASHPSFTARPQMTIESPPTWSNGHQSFMKDDDCEDPVPY GTKSLVVTRNSGTTVAARVGGIQDQKRTRSPPHSTNGTTAQDSSLSFPQRPSDLPVHNANPFVKTNTPPLAFQKNPNAHARPSFGAGQSAAYSSPAWDGS SSMEGHFQDLGSRKKLSPGQVNDVRNGNLPKRSRSPPVSGSWQENPPVENGAKRPFSPLGMETQSDAFRVTSDPQTSQRVLPSMRNEAVKSIPVRNASDD VSKRTRSSNIPSDKVLLGTSFSSADDAEREIHAKEKRLARFKEELTEDSKNSIGIGDRDIPVESERAERERKGDLDQYERLDGDRNQTNRFLAVKKYTRT AEREAYLIRPMPILQNTIEYLLSLLDKPYNSEFLGKYNFLWDRMRAIRMDLRMQHIFNLEAITMLEQMIRLHVIAMHELCEYTKGEGFSEGFDAHLNIEQ MNKTSVELFQMYDDHRKKGVNVPSEKEFRGYYALLKLDKHPGYKVEPSELSLDLAKMTPEIRQTAEVLFARDVARACRTGNFIAFFRLARKATYLQACLM HAHFAKLRTQALASLYSGLQTKQGIPVSHVAEWLAIEGEDVDNLLAYYGFSIKEFEEPYMVKEGPFLNSDKDFPTKCSRLVHLKKSAMIVGDVSSSSQET SLPERTRKLEVPSNFRLDTKSTPASVDKKRPIHVIDEMSTLQAVPSPKFGKQKQRVIGRSEVEQVDTERNHVTSASIAPWTFTTDHSAQNSLPVVVGVPE KRRTDSPFPIIPDLHATHKIEAMPLQPGFRMPLKEDLSSVEKDNQTDNIICQIIPTNPSKDEEPPDVDQEHKSDELMENYIDEEVAEAKLKLIIRLWKRR ASRHKELRQRRKMAADAAISSLSLGPPIQMIQEQPSNNLEFDINHIMRERCRIYKQSWSKLNLSEVILNEVAARNPDAKCLCWKLVLCSQAEEGDQRGSN SHLSHATAGPWLYSKLMPGKQKDKDDDELLVSSPGLSIWRKWFPGQTRNEPTCCFSVVRDSSFCSLNESVAGASAVLFVVSENIPMSVQRIKLHNLIMAI RPGSSLPLLVFSGKSDGKFSDPFSVIVGELGLNTVDKSKIQSFSVLFLVGNEVREDSNGFFSDGRVREGLRWLASESPVQPDLEYIKMSELLLTRLRPSL DALESTSDPEVGQNTCISAFNEALDWCTEEICAAARANAISWPCPELVSLDDFPSESMVIKSYLPSIGWSEASATDPLVSAARKCKLPSFSDDVSWLDEG TTIGDQLGKLTSDLESSLTRYLTESSGMMGFQLAAKEAHVILQKSAHLEIRDATYHIIVNWAKMFRRIFNWQLGKLSSSVYILSSHLVDSTSWLLVKSGS GGDASYPYFNQLSLDQVIHVGSIPLLLKRNRPKPYVSLPASISSLSPPDDDVLATMRPVTWTITDEEASSSQIGGLGVVGDRERRVVAKTPQIPQKSSKE GDKLSRLLEQCNIVQNRIEEKLSIYF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	0	1
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	1.4	0.9329
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	1.4	0.9299
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	4.2	0.9265
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	5.5	0.9146
AT1G11060			WAPL (Wings apart-like protein...		Lus10001211 [exp]	7.9	0.9107
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	8.0	0.9132
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	8.4	0.9135
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	8.4	0.9149
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	8.9	0.9173
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	8.9	0.9105

Compare expression of checked genes

Lus10012769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.