Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15530 1507 / 0 PPDK pyruvate orthophosphate dikinase (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034005 [exp] 1875 / 0 AT4G15530 1504 / 0.0 pyruvate orthophosphate dikinase (.1.2.3.4.5.6) Lus10006147 [exp] 209 / 4e-63 AT4G15530 168 / 1e-49 pyruvate orthophosphate dikinase (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027800 [exp] 1603 / 0 AT4G15530 1592 / 0.0 pyruvate orthophosphate dikinase (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF02896 [flax] [poplar] PEP-utilizers_C PEP-utilising enzyme, PEP-binding domain CL0179 [flax] [poplar] ATP-grasp PF01326 [flax] [poplar] PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain CL0364 [flax] [poplar] Leu-IlvD PF00391 [flax] [poplar] PEP-utilizers PEP-utilising enzyme, mobile domain
Representative CDS sequence Show only first row Show all	>Lus10012770 pacid=23142332 polypeptide=Lus10012770 locus=Lus10012770.g ID=Lus10012770.BGIv1.0 annot-version=v1.0 ATGAAGGGAGTGATACTCAGGACTTCTCCGGCTCCGCCCGATGTGACCGCGTCGAAACAGAGGCTCTTCTTTAACGGGAAGTACGCCGATCAAAGGATCA ACAATGATATTCTCTTCACAAGAGACGCCCCCAGCCGATCGATTCCCGGCGGAGTTTACTGCCAGCTGGACCGAAATTCATTTGGTGCCGGCCTAGTCGC CGGTAAGCCCTCTGCTACTGTGCGTGATGTCCGTGTTCAAGTTCTTAGCAGTCCAATTTCCGAGGAGACTACGCCCAGGATCAAGAAGAGGGTTTTCACG TTTGGGAAAGGGAAGAGTGAAGGCAACAAGAGCATGAAGTCATTGCTTGGAGGGAAAGGAGCAAACTTGGCGGAAATGGCGACAATAGGCCTCTCAGTCC CGCCAGGCCTGACAATCTCAACAGAGGCATGCCAAGAATACCAGCACAACGGGAAGAATCTCTCCAATGGGTTGTGGGAAGAAGTATTACAAGGATTGAA AATCGTGGAGAATGATATGGGAGCTACTCTTGGAGATCCTTCCAAACCCCTTCTCCTGTCTGTTCGATCCGGAGCCGCTATATCAATGCCTGGAATGATG GACACTGTCCTTAATCTGGGACTCAATGATGAGGTTGCATCCAGTTTAAGCGCCAAGAGTGGAGAGCGGTTCGCTTACGACTCATACCGGCGCTTCCTAG ACATGTTTGGCGGTGTGGTGATGGGGATTCCGCACTCCTTGTTCGAAGAGAAATTGGAAGGGATGAAGGAAGCGAAAGGAGCGAGGCTCGACACCGATCT GTCAGCTTCCGATCTGAAAGAGCTGGTGGAGCAGTACAAGCAAGTGTACGTTGAATCGACCGGAGATAAGTTCCCTTCTGATCCTAAGCAGCAACTGCTG TTGGCAGTGAAGGCGGTGTTCGATTCGTGGGACAGCCCGAGAGCGAACAAGTACAGGAGCATAAACCAGATCACGGGGCTGAAAGGAACTGCAGTGAATG TTCAATGTATGGTGTTTGGGAACATGGGGAACACCTCTGGAACAGGGGTTCTCTTCACCAGAAACCCAAGTACCGGAGAGAACAAGCTCTACGGCGAGTT CTTGATCAATGCTCAGGGGGAAGACGTTGTCGCCGGGATTCGAACCCCGGAGGACATAAGCGCGATGAAGAACTGTATGCCGGAAGCTTACAAGGAGCTC GTGGAGAACTGTGATATCCTGGAGAGGCATTACAAGGACATGATGGATATCGAGTTCACAGTGCAAGAGAACAGGCTGTGGATGTTACAGTGTAGGGCAG GTAAGCGTACTGGGAAAGGTGCTGTGAAGATAGCGGTGGATATGGTGAACGAAGGGCTAATCGATACTCGTACTGCTGTCATGAAAGTTGAGCCTCAACA TCTTGATCAACTTCTTCATCCACAATTTGAGGATCCTAGTGGTTACAAGGACAAGGTGTTGGCCACCGGACTACCTGCATCACCCGGGGCAGCAGTGGGG CAGGTGGTGTTCAGCGCAGAGGAAGCAGAAGCATGGCATGCACAAGGGAAAAGTGCCATCCTCATCAGAACAGAGACAAGTCCAGAGGACGTCGGAGGAA TGCACGCCGCCGCAGGAATCTTGACTGCTAGAGGAGGAATGACGTCTCACGCCGCCGTCGTGGCTCGCGGCTGGGGAAAATGTTGCGTCTCTGGATGCCC TGATCTCCGAGTCAATGATGCCGAGAGGGTTGTGGCGATTGGAGATGAATTGATCAGAGAAGGAGAATGGTTGTCTTTGAACGGATCAACTGGAGAAGTG ATACTAGGGAAGCAGCCGTTAGCTCCTCCTGCTCTCAGTGGCGATTTGGAGACGTTCATGTGCTGGGCTGATGAGATACGGCGGATTAAGGTGATGGCGA ATGCTGATACACCTGAAGATGCTTTGGCTGCTAGAAACAATGGTGCTCAAGGGATTGGACTTTGCAGGACGGAGCACATGTTTTTTGCTTCTGATGAAAG GATCAAGGCTGTGAGGAAGATGATAATGGCAGAGACACAAGAGCAAAGGAAAGCAGCGTTGGACCTGTTGTTGCCTTACCAACGATCTGACTTCGAGGGC ATCTTTCGTGCCATGGATGGGCTTCCAGTGACGATCAGATTGTTGGATCCTCCTCTTCATGAGTTTCTTCCAGAGGGAGACTTGGAACAGGTCGTTGAGG AGCTAACAACTGATACCGGAATGACTGAAGATGAAGTCTTCGCCAGGATTGAGAAACTGTCTGAAGTGAATCCAATGCTTGGCTTCCGAGGATGCAGGCT TGGAATCTCGTATCCAGAACTGACAGAAATGCAAGCTCGAGCAATTTTCCAGGCTGCAATTTCGATGAGCCAACATGGAATCAAAGTTTTCCCTGAGATC ATGGTTCCCCTTGTTGGAACTCCACAGGAATTAGGACATCAGATTGGCTTGATACGAGAGGTGGCAAACAAGGTGTTCTCCGAGACAGGTATCACCTTGA CTTACAAGGTTGGAACCATGATTGAGATTCCCAGAGCTGCTTTGGTTGCTGAAGAGATAGCGATAGAAGCAGAATTCTTCTCGTTTGGAACCAACGACCT GACACAGATGACATTCGGGTATAGCAGAGATGATGTGGGCAAGTTCCTTCCCACATACTTGGCCCAGGGAATCCTTCAGAGCGACCCATTTGAGGTTCTT GACCAGAAAGGAGTTGGGCAACTCATCAAGATGGCCACCGAGAAAGGCCGCTCTGCCCGTCCCAGCTTAAAGGTGGGTATATGCGGAGAGCACGGAGGGG AGCCTTCATCAGTAGCGTTCTTTGCAGAAGCTGGATTGGACTATGTTTCATGTTCTCCCTTCAGGGTTCCAATTGCAAGGTTAGCTGCAGCTCAAGTGGC AGTGTGA
AA sequence Show only first row Show all	>Lus10012770 pacid=23142332 polypeptide=Lus10012770 locus=Lus10012770.g ID=Lus10012770.BGIv1.0 annot-version=v1.0 MKGVILRTSPAPPDVTASKQRLFFNGKYADQRINNDILFTRDAPSRSIPGGVYCQLDRNSFGAGLVAGKPSATVRDVRVQVLSSPISEETTPRIKKRVFT FGKGKSEGNKSMKSLLGGKGANLAEMATIGLSVPPGLTISTEACQEYQHNGKNLSNGLWEEVLQGLKIVENDMGATLGDPSKPLLLSVRSGAAISMPGMM DTVLNLGLNDEVASSLSAKSGERFAYDSYRRFLDMFGGVVMGIPHSLFEEKLEGMKEAKGARLDTDLSASDLKELVEQYKQVYVESTGDKFPSDPKQQLL LAVKAVFDSWDSPRANKYRSINQITGLKGTAVNVQCMVFGNMGNTSGTGVLFTRNPSTGENKLYGEFLINAQGEDVVAGIRTPEDISAMKNCMPEAYKEL VENCDILERHYKDMMDIEFTVQENRLWMLQCRAGKRTGKGAVKIAVDMVNEGLIDTRTAVMKVEPQHLDQLLHPQFEDPSGYKDKVLATGLPASPGAAVG QVVFSAEEAEAWHAQGKSAILIRTETSPEDVGGMHAAAGILTARGGMTSHAAVVARGWGKCCVSGCPDLRVNDAERVVAIGDELIREGEWLSLNGSTGEV ILGKQPLAPPALSGDLETFMCWADEIRRIKVMANADTPEDALAARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAETQEQRKAALDLLLPYQRSDFEG IFRAMDGLPVTIRLLDPPLHEFLPEGDLEQVVEELTTDTGMTEDEVFARIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFQAAISMSQHGIKVFPEI MVPLVGTPQELGHQIGLIREVANKVFSETGITLTYKVGTMIEIPRAALVAEEIAIEAEFFSFGTNDLTQMTFGYSRDDVGKFLPTYLAQGILQSDPFEVL DQKGVGQLIKMATEKGRSARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	0	1
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	1.0	0.9817
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	1.4	0.9281
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	2.4	0.9262
AT4G32140			EamA-like transporter family (...		Lus10026249 [exp]	3.9	0.8993
AT3G03790			ankyrin repeat family protein ...		Lus10010659 [exp]	4.5	0.9020
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10026429 [exp]	5.2	0.8859
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10009921 [exp]	5.3	0.8559
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	5.5	0.8803
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	5.5	0.8979
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10029616 [exp]	5.7	0.8801

Compare expression of checked genes

Lus10012770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.