Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15520 348 / 2e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT5G15390 54 / 2e-08 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT2G19870 48 / 2e-06 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034004 [exp] 432 / 1e-156 AT4G15520 346 / 1e-122 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10032993 [exp] 51 / 2e-07 AT5G15390 403 / 1e-140 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10011129 [exp] 49 / 9e-07 AT2G19870 472 / 1e-161 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10043030 [exp] 49 / 2e-06 AT2G19870 473 / 7e-162 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198200 [exp] 368 / 3e-131 AT4G15520 347 / 9e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.001G150900 [exp] 53 / 6e-08 AT4G17610 1934 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.004G122300 [exp] 52 / 1e-07 AT5G15390 430 / 9e-152 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.018G087800 [exp] 48 / 2e-06 AT2G19870 499 / 8e-171 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF00588 [flax] [poplar] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Lus10012771 pacid=23142369 polypeptide=Lus10012771 locus=Lus10012771.g ID=Lus10012771.BGIv1.0 annot-version=v1.0 ATGGGGATCGAGAGCTACGTGATAGTACACAACATAGCCAAGCGGCACAACGTCGGCACGCTTGCCCGGAGCGCCACGGCGTTCGGGGTCACGGAGCTCA TTCTCAGCGGCCGTCGGGACTTCAACTCCTTTGGCAGCCACGGCTCCACCTCTCACGTCCGCTTCCGCCACTTCCATTCCCTCCTCGAAGCCCGCCACTT CCTCAAGGAGAAAGATTGTGATATATGCGGGGTTGAGATAGCAGAGGGTGCTCTCCCTGTAAATGATCATCCTTTTAAAAAGAGCACAGCTTTCCTTCTG GGTAACGAGGGAACAGGACTTTCTGCCAAAGAATGTGAGATCTGTGACTTCTTTGTCTACATTCCGCAGTACGGATGTGGGACTGCTTCATTGAATGTTA CTGTCGCTGCTTCCATTGTTCTTCACCATTTTGGAGTTTGGGCAGGATTTTCTGAGCGGACTCGTGACGGGAACAAGTTTATCGTAGCTGAGAGACCACA GAAGCAAGGAAAATACTGCACTGAAACGGAAGAATCGATCACTGAAGAGAGGAAGTGTAAAAGGGAAAGTGCAGCTAATGGTGGATTCTTTGAGGAGGCA GGGAAAGGAGATTCTTCTGCTAACCTTCTTGATGCCTTGTTTATAGAGGCTTGA
AA sequence Show only first row Show all	>Lus10012771 pacid=23142369 polypeptide=Lus10012771 locus=Lus10012771.g ID=Lus10012771.BGIv1.0 annot-version=v1.0 MGIESYVIVHNIAKRHNVGTLARSATAFGVTELILSGRRDFNSFGSHGSTSHVRFRHFHSLLEARHFLKEKDCDICGVEIAEGALPVNDHPFKKSTAFLL GNEGTGLSAKECEICDFFVYIPQYGCGTASLNVTVAASIVLHHFGVWAGFSERTRDGNKFIVAERPQKQGKYCTETEESITEERKCKRESAANGGFFEEA GKGDSSANLLDALFIEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10012771 [exp]	0	1
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10030359 [exp]	20.0	0.6732
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	21.2	0.6510
AT5G55830			Concanavalin A-like lectin pro...		Lus10022520 [exp]	27.7	0.6627
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10039915 [exp]	38.8	0.6516
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	108.7	0.5929

Compare expression of checked genes

Lus10012771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.