Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21530 487 / 1e-170 DNAse I-like superfamily protein (.1) AT2G48030 406 / 4e-139 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034003 [exp] 833 / 0 AT3G21530 504 / 2e-176 DNAse I-like superfamily protein (.1) Lus10027979 [exp] 442 / 1e-152 AT2G48030 479 / 3e-167 DNAse I-like superfamily protein (.1) Lus10008177 [exp] 442 / 2e-152 AT2G48030 486 / 5e-170 DNAse I-like superfamily protein (.1) Lus10029630 [exp] 425 / 6e-146 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1) Lus10042675 [exp] 424 / 2e-145 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G198100 [exp] 610 / 0 AT3G21530 506 / 1e-177 DNAse I-like superfamily protein (.1) Potri.014G136900 [exp] 505 / 5e-177 AT2G48030 516 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10012772 pacid=23142340 polypeptide=Lus10012772 locus=Lus10012772.g ID=Lus10012772.BGIv1.0 annot-version=v1.0 ATGTTGAGTACAGTGAGCAAGAAACTGAGGCTGATATGGTCCAGGATAAGGTGGCTGATATGCAAGCGCCCGAGGCCAAAAGTCATAATCCGAAGGCTCG GAAAGAAGATGGTCTCCAAAGATCGGTGTAAATGGGAGCCCGGATCCAGGAGATCATCTATACTGAGTCGTCTCAGTCCACAGAAGCCAATTCGAGTTGC TACTTTCAACGTTGCCATGTTCCATCTGGCACCTGCGGTTCCAAAGTCTGAAGATATGGCGAAGTTAGGACAAGAAGAGATAGTGGAGGAGGATTTCAGT TTTCGAATCTACCATCCGAAGAGCATCCTCAAGCAATCTCCACTACATTCATCATCACTCAAGTCCCCAGAACAGCAGCTGTCCAGATCGAAACAGAAAG TGTCGATCAACCTTCCGGACAACGAGATTTCATTGGCGCACGGGAAGTTCTTGAGCCTTGTGAAGGAAGAAAGAGAGGGATCGTCGAGAATCATTGCCAG CAGAAACTACAGGAGCAGTGTGGTAATGAGGTCGCCGGTTTCTTTGCCTGCAAGTTACAACAACACGGCCAAGTCGAGAAGTAGTGAAGAGGATTCAACG AGCAGCCGAAGAAGGAGCGTCTTCGAAGTACTTCGAGAAGTGGGTGCGGATGTTTTGGCCCTCCAGGATGTGAGGGCAGATGAAGAGAAGGATATGAGAC CGTTATCCGATCTGGCTGCTTCCCTGGGGATGAAGTATGTGTTTGCTGAGAGCTGGGCTCCGGAGTACGGGAATGCGATCCTGTCAAAATGGCCTATCAG AAGATGGAAAGTTCAGAAGATAGCAAACGATCAAGATCACAGGAACGTGCTCAAGGCCACAATTGATGTTCCGTGGGCTGGGGAAGTTGACTTCTACTGC ACGCAGCTCGACCATTTGAACGAGAATTGGCGAATGAAGCAGATCAACACGATCATGCAGTCGAACGACTCCCCCCACGTATTGGCTGGAGGTTTGAATT CCCTGGATGGGTCGGATTACTCATCGGAGAGATGGATGGATATTGTCAGGTACTATGAAGATATAGGGAAGCCAACACCAAGGGTCAAAGTAATGGAGTT TCTAAAGGCTAAAGGCTACACAGATTCGAAAGAATATGCAGGAGAATGCGAGCCGGTGGTGATCATTGCCAAAGGCCAAAATGTTCAAGGTACATGTAAG TATGGGACACGAGTCGATTACGTTCTAACATCGCCAGACTCACAATTCGAGTTTGTTCCGGGATCTTACTCAGTGATATCGTCAAAGGGTACTTCTGATC ATCACATAGTTAAGGTTGACATCAGAAAAGCAAGAGAGAGTTGCCAAACTAAGGGCCAATCCAAGAAAGCAAAACAATTGTGA
AA sequence Show only first row Show all	>Lus10012772 pacid=23142340 polypeptide=Lus10012772 locus=Lus10012772.g ID=Lus10012772.BGIv1.0 annot-version=v1.0 MLSTVSKKLRLIWSRIRWLICKRPRPKVIIRRLGKKMVSKDRCKWEPGSRRSSILSRLSPQKPIRVATFNVAMFHLAPAVPKSEDMAKLGQEEIVEEDFS FRIYHPKSILKQSPLHSSSLKSPEQQLSRSKQKVSINLPDNEISLAHGKFLSLVKEEREGSSRIIASRNYRSSVVMRSPVSLPASYNNTAKSRSSEEDST SSRRRSVFEVLREVGADVLALQDVRADEEKDMRPLSDLAASLGMKYVFAESWAPEYGNAILSKWPIRRWKVQKIANDQDHRNVLKATIDVPWAGEVDFYC TQLDHLNENWRMKQINTIMQSNDSPHVLAGGLNSLDGSDYSSERWMDIVRYYEDIGKPTPRVKVMEFLKAKGYTDSKEYAGECEPVVIIAKGQNVQGTCK YGTRVDYVLTSPDSQFEFVPGSYSVISSKGTSDHHIVKVDIRKARESCQTKGQSKKAKQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21530			DNAse I-like superfamily prote...		Lus10012772 [exp]	0	1
					Lus10033269 [exp]	2.4	0.9621
					Lus10008301 [exp]	4.0	0.9564
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10029684 [exp]	4.9	0.9559
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	6.9	0.9521
AT1G68940			Armadillo/beta-catenin-like re...		Lus10013050 [exp]	7.1	0.9396
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	7.3	0.9497
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10018306 [exp]	8.1	0.9290
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042816 [exp]	8.5	0.9384
AT1G27170			transmembrane receptors;ATP bi...		Lus10005171 [exp]	10.2	0.9367
AT5G58630			unknown protein		Lus10040661 [exp]	11.6	0.9326

Compare expression of checked genes

Lus10012772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.