Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32020 52 / 3e-08 unknown protein AT3G21570 50 / 9e-08 unknown protein AT4G02040 45 / 5e-06 unknown protein AT2G25250 39 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034002 [exp] 296 / 2e-102 AT3G21570 70 / 5e-15 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027500 [exp] 165 / 3e-51 AT4G02040 55 / 1e-09 unknown protein Potri.008G198000 [exp] 120 / 1e-33 AT4G02040 56 / 9e-10 unknown protein Potri.006G260000 [exp] 39 / 0.0008 AT4G32020 47 / 1e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012773 pacid=23142329 polypeptide=Lus10012773 locus=Lus10012773.g ID=Lus10012773.BGIv1.0 annot-version=v1.0 ATGGCGACGGAGATCTTGAGGCCTCGGGATTGTTTAACCCAAAGGGTCAGAGTCTCTCCTTGTCGCCGGAGAAACTTCCAATACCATGCCCACGCTAACC CCAGCGCAAACCTCGCCTCTAATTATGCTAATTATTCTAGCAATAGCTCGTCTAATCCGAGGTTGAACCGAAAGCCGGCCGCTGCCGGTGGTCATCGCCC CGACCAGAAGAAGCGTCATCAACCGGAGCCGTCGATCTCCAAGAGATCTACCTCCGCCGATGACTTGAGGATCTCTAGAAGCCAGAGCCAGAGCCAAAGC CAAAGCCATGGCAATCACCATAGCCACAGCCAAAGCCACAGCCTGGTTATGGATAAGGTAACGATTCTCCGTCGCGGTGAGTCGCTCGATTCGAGGATCG TTGCCGGTGGTGAAACGACAACATCGATGATGGTTGCGAACGGTACGGAAAGGATCGGACCGGGGCCCGAAGTGGTTCCGAGGCAGATAAGAATTATCGA CGGGAAGCCTCCTCAGCCGCAGGTTTCCAACAGAAAGGCCGACGTGTACGCCGGATCGGCGTTCGCGGTGTCTCCAGAGCCCAGCGACCTTCCGTTGCCT TCTTTCTCGAAGAAGAAGCAGGTATCGGTTGACGACTCGGCCACCAGAGACCTCCGGCGTCTGCTCCGGCTGGATCTTTGA
AA sequence Show only first row Show all	>Lus10012773 pacid=23142329 polypeptide=Lus10012773 locus=Lus10012773.g ID=Lus10012773.BGIv1.0 annot-version=v1.0 MATEILRPRDCLTQRVRVSPCRRRNFQYHAHANPSANLASNYANYSSNSSSNPRLNRKPAAAGGHRPDQKKRHQPEPSISKRSTSADDLRISRSQSQSQS QSHGNHHSHSQSHSLVMDKVTILRRGESLDSRIVAGGETTTSMMVANGTERIGPGPEVVPRQIRIIDGKPPQPQVSNRKADVYAGSAFAVSPEPSDLPLP SFSKKKQVSVDDSATRDLRRLLRLDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21570			unknown protein		Lus10012773 [exp]	0	1
AT3G21570			unknown protein		Lus10034002 [exp]	3.0	0.9169
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	4.1	0.9217
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	4.7	0.9194
AT1G10350			DNAJ heat shock family protein...		Lus10013280 [exp]	6.7	0.8909
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	6.9	0.8912
AT2G39710			Eukaryotic aspartyl protease f...		Lus10000514 [exp]	7.7	0.8202
AT3G18930			RING/U-box superfamily protein...		Lus10012033 [exp]	8.1	0.8936
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	8.3	0.8703
AT5G01710			methyltransferases (.1)		Lus10014232 [exp]	8.5	0.8869
AT4G00300			fringe-related protein (.1.2)		Lus10005120 [exp]	9.6	0.9127

Compare expression of checked genes

Lus10012773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.