Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003770 [exp] 180 / 3e-59 ND / Lus10008569 [exp] 144 / 4e-44 AT1G48120 50 / 6e-07 hydrolases;protein serine/threonine phosphatases (.1) Lus10017783 [exp] 132 / 3e-39 ND / Lus10004097 [exp] 123 / 8e-35 AT1G48120 61 / 4e-10 hydrolases;protein serine/threonine phosphatases (.1) Lus10003038 [exp] 120 / 2e-33 ND 61 / 7e-10 Lus10027017 [exp] 105 / 4e-30 ND / Lus10005532 [exp] 100 / 3e-26 ND 52 / 3e-07 Lus10022177 [exp] 96 / 3e-26 ND 39 / 5e-04 Lus10024253 [exp] 97 / 1e-25 AT1G48120 40 / 4e-04 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012774 pacid=23142353 polypeptide=Lus10012774 locus=Lus10012774.g ID=Lus10012774.BGIv1.0 annot-version=v1.0 ATGCACGGGAGGACTCGGGGCCTCTTGCTTCCAGAGTACAGACAGATGTTCGATAAGGGCACCCCGTTCGTGAAGAATGAGCACGCATGGGAGGCGAGGG TGGACCAGTACCTTGTCCAGTGGGCGAGCAGATTGGACCACGAGGTAGCGAGTGCTTTTCTCGACGATCTGGAGAGGTGGCACTTCCACGACGAGTACAT GGTGTGGTACCGTCAGTACATTCGTCGGTGTACATCGAGACGTGGGACAGTGCCAGCAATCCATCGTTCAACGGAGCAGCTCGGCCGAGAGGACACCAAG GTGGTTCGGCAGTATCTGCGTTCCATGATGTACGCTAGCGGAGGCATAGAGCATAAGTTTGGTGACTCGGGGCGTCACCCACAGATCTCCCCCACTGGCC AGATCTACACGGCTTATGACTCGTACGCTGTTGATCCACTAAGCTAG
AA sequence Show only first row Show all	>Lus10012774 pacid=23142353 polypeptide=Lus10012774 locus=Lus10012774.g ID=Lus10012774.BGIv1.0 annot-version=v1.0 MHGRTRGLLLPEYRQMFDKGTPFVKNEHAWEARVDQYLVQWASRLDHEVASAFLDDLERWHFHDEYMVWYRQYIRRCTSRRGTVPAIHRSTEQLGREDTK VVRQYLRSMMYASGGIEHKFGDSGRHPQISPTGQIYTAYDSYAVDPLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012774 [exp]	0	1
					Lus10002152 [exp]	2.8	0.9642
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10007325 [exp]	3.3	0.9051
					Lus10010117 [exp]	4.0	0.9642
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	4.9	0.9642
AT3G52620			unknown protein		Lus10022704 [exp]	5.2	0.6622
					Lus10005187 [exp]	5.7	0.9642
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	6.3	0.9642
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	6.9	0.9642
					Lus10039750 [exp]	7.5	0.9635
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	8.0	0.9303

Compare expression of checked genes

Lus10012774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.