Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15545 270 / 5e-89 unknown protein AT1G16520 109 / 4e-27 unknown protein AT1G56080 108 / 4e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034001 [exp] 410 / 6e-144 AT4G15545 382 / 5e-133 unknown protein Lus10031771 [exp] 149 / 1e-41 AT1G16520 400 / 1e-139 unknown protein Lus10031193 [exp] 108 / 1e-26 AT1G16520 352 / 5e-121 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027400 [exp] 317 / 3e-107 AT4G15545 355 / 2e-122 unknown protein Potri.007G066900 [exp] 105 / 8e-26 AT1G16520 383 / 2e-133 unknown protein Potri.005G097600 [exp] 105 / 1e-25 AT1G16520 338 / 1e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012775 pacid=23142352 polypeptide=Lus10012775 locus=Lus10012775.g ID=Lus10012775.BGIv1.0 annot-version=v1.0 ATGGTGGGGGAAGAAGAAGCGGGGAGTAGCGGTGGTGATGGCGGTGGCGCCACTTTCGACCTTCCCGAGGAGGTATTGTCAGTCCTTCCTTCTGATCCTT TCCAACAGCTCGACGTGGCCCGCAAAATCACCTCCATTGCTCTCTCCACACGTGTCTCCGCTCTCGAGTCCGAATCCGCCTCCCTCCGCTCCCAGCTCCT CGACCGCGACAACCTCATCGCTGACCTCCACTCCCAGATTGATTCCCTCGCCGCCGAACTCTCCTCCGCCTCCGACAAGCTCTCCCTCGCCGACCAAGAC AAGGATAACTTGCTCAGAGACAATGCTGCACTCTCCAATACTGTCAGGAAGCTCCACCGCGATGTTGCCAAGCTGGAGGTTTTCAGGAAGACGCTTATGC AGTCGCTTCAAGAGGATGATGACAGCTCTGCCAGAAGCAGTAGTTCTCAAGTCGTACAGGTTGGAGGAGGAGGAGGAGGAGCTGAAGGAGCTCAGCAAAT AATTGCTAAGCTAACACCTAACGAGGATGATACCATGTTGCCACCTTTGAGATCGTCCTCCACAGCGAGTCAGTACTCTGAAGTTGGGAACTCTTACACT GAAGATCGCAGCTCGGATGCACCGAGACCTGGTGTGTCAATGTCGATGCTGCTATCGTCTCAGACAAGCACACCCAAGCTGACGCCACCCGGTTCACCTC CAAGTGTATCGGCTTCTGGATCGCCTACGAGATCATCTAAACCCGTCTCGCCAAGGCGAAGTACCATGTCATTTTCTACTTCCAGAGGGATGGTGGACAC AGCTTCACAGACTGGGAGAGGCAGAGTTGATGGGAAGGAATTCTTCCGCCAAGTTAGGAGCCGGTTGTCTTACGAGCAGTTTGGTGCGTTTCTGGCTAAT GTGAAGGAATTGAACTCCCACAAGCAAAGTAAAGAGGAAACATTGAGAAAGGCTGAGGAAATATTTGGCCCAGAAAGCAAGGACCTCTACATCATATTTG AAGGACTAATCTCTAAAAAGTAG
AA sequence Show only first row Show all	>Lus10012775 pacid=23142352 polypeptide=Lus10012775 locus=Lus10012775.g ID=Lus10012775.BGIv1.0 annot-version=v1.0 MVGEEEAGSSGGDGGGATFDLPEEVLSVLPSDPFQQLDVARKITSIALSTRVSALESESASLRSQLLDRDNLIADLHSQIDSLAAELSSASDKLSLADQD KDNLLRDNAALSNTVRKLHRDVAKLEVFRKTLMQSLQEDDDSSARSSSSQVVQVGGGGGGAEGAQQIIAKLTPNEDDTMLPPLRSSSTASQYSEVGNSYT EDRSSDAPRPGVSMSMLLSSQTSTPKLTPPGSPPSVSASGSPTRSSKPVSPRRSTMSFSTSRGMVDTASQTGRGRVDGKEFFRQVRSRLSYEQFGAFLAN VKELNSHKQSKEETLRKAEEIFGPESKDLYIIFEGLISKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15545			unknown protein		Lus10012775 [exp]	0	1
AT4G15545			unknown protein		Lus10034001 [exp]	1.0	0.9382
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	4.7	0.8294
AT4G01400			unknown protein		Lus10012607 [exp]	6.9	0.7950
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10040706 [exp]	7.1	0.8113
AT2G38780			unknown protein		Lus10016355 [exp]	7.3	0.7891
AT2G29970			Double Clp-N motif-containing ...		Lus10036183 [exp]	11.8	0.7887
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10040657 [exp]	12.8	0.7974
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10018649 [exp]	13.0	0.7787
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10018201 [exp]	13.9	0.7744
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	14.4	0.7895

Compare expression of checked genes

Lus10012775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.