Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18910 565 / 0 Protein kinase superfamily protein (.1) AT3G05140 431 / 5e-146 RBK2 ROP binding protein kinases 2 (.1) AT5G35960 416 / 2e-140 Protein kinase family protein (.1) AT5G65530 385 / 3e-128 Protein kinase superfamily protein (.1) AT5G10520 378 / 5e-125 RBK1 ROP binding protein kinases 1 (.1) AT2G18890 325 / 2e-105 Protein kinase superfamily protein (.1.2) AT5G57670 310 / 3e-97 Protein kinase superfamily protein (.2) AT1G77280 255 / 9e-75 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 244 / 5e-71 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G20300 242 / 3e-70 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034000 [exp] 932 / 0 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 427 / 1e-143 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10008192 [exp] 425 / 1e-143 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10035949 [exp] 397 / 7e-132 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10041248 [exp] 392 / 2e-127 AT5G18860 362 / 5e-117 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10012727 [exp] 352 / 3e-113 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10025713 [exp] 338 / 3e-110 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10006957 [exp] 316 / 8e-103 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10019990 [exp] 321 / 4e-101 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027301 [exp] 564 / 0 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136300 [exp] 455 / 7e-156 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.013G028100 [exp] 437 / 9e-148 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.008G197800 [exp] 394 / 2e-131 AT5G18910 348 / 2e-115 Protein kinase superfamily protein (.1) Potri.007G011700 [exp] 388 / 4e-129 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.006G166600 [exp] 341 / 6e-112 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.018G091200 [exp] 332 / 1e-108 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.018G096100 [exp] 334 / 2e-106 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 331 / 3e-105 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.005G182800 [exp] 268 / 9e-80 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012776 pacid=23142334 polypeptide=Lus10012776 locus=Lus10012776.g ID=Lus10012776.BGIv1.0 annot-version=v1.0 ATGGATGGTAATGATCGAGCGCCCCAACCTGCGCCTTGGTCTTCTTTTCAGCATTTTAACCTCTGGCCCAAGTTCTCTATTGGCCGGGAGCCAGCCAAAG AAGCCATCCAAGATAAAGGCCCTATCCCTATCTCTGGCAGAAGAAGTCGGGCTGGCTTCTCTGACACCTTCACCGATCTTGCATATGTGCGTGAATTGAT ACAACAAACTTCTCGCTTTTTGCTTAGTGTTTTGGATTATGATGGTAACTCCAATGGTAGAACCCTTTGTATCTCAGACTTGGGATCTCTAGTTGCGGAT GACCACGAGGAGGATAAGGCTCAAAGTCAAGTCCAAGCTAAATCTCAGGCAGATGCAGAGCCATCTGCATCAGGCGTATCAGAAGATAGCTCGATTGTTA GTGTAGAATCCGATGCAGCTCCCAATCCAACGGGAAGTCCCAAAACCAGCCCAGCTGCGGCCACCACATCAGCTTCTGATGGGTCTCAGCTCGCAAGCAC CTCCGGTGCGGACCCTCTTTCCGTAGTTCCGTTGATATGGCGGGACTTTTTCAAGGCCTTCAAGAAGGGACCCGCACCTCTCATGCGTAAGCAAAATATT CCCAGCTTGATAAGGGCGGTCCCTAAACTCACCAGGAGGAAGAGCAAAAGGATTAGGGAAGGCATGGTTCCAGCATTAAGCTCCCCTCTTGATGCGGAAC TCTGTTACCTTAAGCCCTCTTGGAAGAATTTTGCGCTATGGGAGTTGCTTGCTGCTACCGATAATTTCAGCCGGGATAAATTGATTGGAGAAGGAGGGTA TGCTGAAGTTTACAAAGGGCAATTGTCTGATGGGCAGTTTGTTGCCATAAAAAGACTAGTTAGAGGCTCTTCCCCTGAAGAGATGACCATGGATTTTTTA TCTGAACTTGGAATAATCTGCCATGTTGACCATCCTAATATTGCTAAATTGATTGGGTATGGAGTTGAAGGAGGAATGCACCTTGTTCTTCAATTGTCCA TCAATGGGAGTGTCTCGTCTTTACTTTACGGGCCAAGGGAACAATTGAGTTGGGCAGTCAGGTACAAAATCGCTTTTGGAACTGCTGAAGGGCTTTTATA TCTTCATGAGGGTTGCCAGAGGAGAATTATCCATAAAGATATCAAAGCTGCTAATATTTTGCTTACAGAAGATTTCGACCCTCAGATTGCAGATTTCGGG CTCGCAAGATGGTTACCGGAGAATTGGACTCATCACACTGTTTCAAAAATTGAAGGCACATTTGGCTATCTACCACCCGAGTTCTTCATGCATGGCATCG TAGACGAAAAAACAGATGTTTATGCTTATGGGGTACTGTTATTAGAGCTCATCACAGGAAGACAAGCTTTAAGTAGTTCCCAACAAAGCCTTGTTATGTG GGCCAAACCTCTGCTAATGCAGAACAAGATCAGCGACCTAGTTGATCCGGTTCTCGGCCAAACTTACAACTTAGAGCAGATGGAACGCGTGGTTTGTTTG GCTGCAATGTGCGTGGAACAGGCCTCGGTCCAGCGGCCGCAAATGAGCCAGGCAGTGGAGATTCTGATGGGAGATGAAAGCACATTGGAAGAGGTAAAAC GGAGGCAAAAGTCTAAACTACGGAGGACATATTCCGAGGAGCTTTTCGATGCGGATGAGTACAACTCGACGAGGTACTTATGTGATCTCAACATACATAT AGAAGACCTTTTGGAACCAGATGATGCAGAGACTTTCGAAGAATGCAGCTCGGTGAAATCGCCACCATCAGATGAAGCGGAGACACCCCCCAACCATGAT TCAGAGAAATCGAAGGACGAGGGGGAGAAATCGAAAGATGAAGGGAAACCGAATGAAGCAGAAGGGAAATCAAATGAAGCAGAAGACAAATCAAATGAAG CAGAAGACAAATAA
AA sequence Show only first row Show all	>Lus10012776 pacid=23142334 polypeptide=Lus10012776 locus=Lus10012776.g ID=Lus10012776.BGIv1.0 annot-version=v1.0 MDGNDRAPQPAPWSSFQHFNLWPKFSIGREPAKEAIQDKGPIPISGRRSRAGFSDTFTDLAYVRELIQQTSRFLLSVLDYDGNSNGRTLCISDLGSLVAD DHEEDKAQSQVQAKSQADAEPSASGVSEDSSIVSVESDAAPNPTGSPKTSPAAATTSASDGSQLASTSGADPLSVVPLIWRDFFKAFKKGPAPLMRKQNI PSLIRAVPKLTRRKSKRIREGMVPALSSPLDAELCYLKPSWKNFALWELLAATDNFSRDKLIGEGGYAEVYKGQLSDGQFVAIKRLVRGSSPEEMTMDFL SELGIICHVDHPNIAKLIGYGVEGGMHLVLQLSINGSVSSLLYGPREQLSWAVRYKIAFGTAEGLLYLHEGCQRRIIHKDIKAANILLTEDFDPQIADFG LARWLPENWTHHTVSKIEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALSSSQQSLVMWAKPLLMQNKISDLVDPVLGQTYNLEQMERVVCL AAMCVEQASVQRPQMSQAVEILMGDESTLEEVKRRQKSKLRRTYSEELFDADEYNSTRYLCDLNIHIEDLLEPDDAETFEECSSVKSPPSDEAETPPNHD SEKSKDEGEKSKDEGKPNEAEGKSNEAEDKSNEAEDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18910			Protein kinase superfamily pro...		Lus10012776 [exp]	0	1
AT2G23690			unknown protein		Lus10016785 [exp]	1.4	0.7199
AT3G50860			Clathrin adaptor complex small...		Lus10041742 [exp]	1.4	0.7897
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	13.3	0.6301
AT1G51650			ATP synthase epsilon chain, mi...		Lus10034841 [exp]	15.0	0.6631
AT5G42470			unknown protein		Lus10033139 [exp]	18.2	0.6742
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	20.2	0.6868
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10001703 [exp]	21.2	0.6069
AT2G25760			Protein kinase family protein ...		Lus10038275 [exp]	25.0	0.6313
AT3G07820			Pectin lyase-like superfamily ...		Lus10002931 [exp]	26.0	0.6058
AT5G45310			unknown protein		Lus10022973 [exp]	26.2	0.6370

Compare expression of checked genes

Lus10012776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.