Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21510 216 / 5e-73 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT1G03430 181 / 2e-59 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT5G39340 177 / 9e-58 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT3G29350 172 / 8e-56 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT3G16360 132 / 3e-40 AHP4 HPT phosphotransmitter 4 (.1.2) AT1G80100 102 / 4e-28 AHP6 histidine phosphotransfer protein 6 (.1.2) AT4G04402 94 / 1e-24 two-component phosphorelay mediator, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033999 [exp] 316 / 1e-112 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10000926 [exp] 194 / 3e-64 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10002256 [exp] 175 / 3e-57 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10023127 [exp] 133 / 2e-40 AT1G80100 178 / 5e-58 histidine phosphotransfer protein 6 (.1.2) Lus10042680 [exp] 132 / 1e-39 AT1G03430 142 / 2e-43 histidine-containing phosphotransfer factor 5 (.1) Lus10011487 [exp] 132 / 2e-39 AT1G80100 194 / 6e-64 histidine phosphotransfer protein 6 (.1.2) Lus10003256 [exp] 127 / 7e-38 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1) Lus10035596 [exp] 126 / 1e-37 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10025821 [exp] 124 / 7e-37 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027100 [exp] 238 / 5e-82 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.008G197600 [exp] 234 / 3e-80 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.013G028300 [exp] 216 / 3e-73 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.005G040400 [exp] 213 / 7e-72 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.006G098200 [exp] 194 / 2e-64 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.016G113500 [exp] 192 / 8e-64 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.014G136200 [exp] 159 / 9e-51 AT1G03430 163 / 2e-52 histidine-containing phosphotransfer factor 5 (.1) Potri.001G189900 [exp] 139 / 7e-43 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.018G046800 [exp] 137 / 3e-42 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2) Potri.006G236300 [exp] 130 / 2e-39 AT3G16360 199 / 1e-66 HPT phosphotransmitter 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [flax] [poplar] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Lus10012777 pacid=23142342 polypeptide=Lus10012777 locus=Lus10012777.g ID=Lus10012777.BGIv1.0 annot-version=v1.0 ATGGAGGTAGTGCAGATGCAGAGAACATGGGTTCAATACACCAAGTCCTTGTTCAATGAGGGTTTTCTGGACAGTCAGTTTGCTCAGCTGCAGCTGCTGC AAGACGAGAGCAACCCTGATTTCGTAGTGGAAGTTGTTTCTCTCTTCTTTGAAGATTCCGATCGCCTCCTCAATGAACTCAGCAAAGCTCTAGATCCACT GCAAGGTGTGGACTTTAAAAAAGTTGATGCACATGTCCATCAACTTAAAGGCAGTAGCTCCAGCATAGGTGCTCAGAGAGTTAAGAATGCTTGTGTTGCC TTCCGTAGCTTCTGTGATGAACAAAACATTGAAGGGAGCCTGAGATGCCTGCAGCAGGTAAAGCAGGAATACTATGTTGTGAAGAACAAGCTTGAGAATC TCATCAGGCTGGAGCAGCAGATTGTGGCTGCTGGAGGAACAGTTCCTATGGAAGAGCTGGGTTTCCAATAA
AA sequence Show only first row Show all	>Lus10012777 pacid=23142342 polypeptide=Lus10012777 locus=Lus10012777.g ID=Lus10012777.BGIv1.0 annot-version=v1.0 MEVVQMQRTWVQYTKSLFNEGFLDSQFAQLQLLQDESNPDFVVEVVSLFFEDSDRLLNELSKALDPLQGVDFKKVDAHVHQLKGSSSSIGAQRVKNACVA FRSFCDEQNIEGSLRCLQQVKQEYYVVKNKLENLIRLEQQIVAAGGTVPMEELGFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10012777 [exp]	0	1
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10015524 [exp]	3.2	0.9300
AT2G44420			protein N-terminal asparagine ...		Lus10033495 [exp]	6.5	0.9332
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10033999 [exp]	7.4	0.9174
AT4G27745			Yippee family putative zinc-bi...		Lus10000335 [exp]	10.4	0.9002
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021501 [exp]	12.0	0.9086
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	15.8	0.9236
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	18.3	0.9198
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	18.8	0.9067
AT1G32310			unknown protein		Lus10030955 [exp]	20.0	0.9035
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10042104 [exp]	20.5	0.8934

Compare expression of checked genes

Lus10012777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.