Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18860 1017 / 0 NSH3 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18890 656 / 0 NSH4 nucleoside hydrolase 4, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18870 280 / 2e-87 NSH5 nucleoside hydrolase 5, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT2G36310 54 / 3e-07 NSH1, URH1 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033998 [exp] 811 / 0 AT5G18860 899 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10041249 [exp] 447 / 2e-143 AT5G18860 639 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10041248 [exp] 435 / 3e-140 AT5G18860 362 / 5e-117 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10003251 [exp] 52 / 1e-06 AT2G36310 540 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10035601 [exp] 51 / 4e-06 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10042608 [exp] 46 / 9e-05 AT1G05620 521 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10022062 [exp] 43 / 0.0008 AT1G05620 506 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197400 [exp] 1121 / 0 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.008G197500 [exp] 1074 / 0 AT5G18860 1106 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.006G083400 [exp] 46 / 7e-05 AT2G36310 534 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Potri.007G144600 [exp] 45 / 0.0002 AT1G05620 524 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01156 [flax] [poplar] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Representative CDS sequence Show only first row Show all	>Lus10012778 pacid=23142367 polypeptide=Lus10012778 locus=Lus10012778.g ID=Lus10012778.BGIv1.0 annot-version=v1.0 ATGCATTTACATAAGAATTCCTGGTTGGTGATCATAGTGCTGTTGAGTACATCACTTGTTGGATCTGAGATTCATGCTGTGAAAGAGGAAGCCAAGCCGC GTCGGATTCTTTTGGATGCTGATGTTGATACAGATGATTTCTTTGCTCTTTTGTACCTCCTCAAGCTTAACAAATCAGATTTTGCGGTCGAGGCAGTGAC AATCAGTGCCAATGCATGGAGTGATGCAGGACATGCTGCGAATCACGTCTATGACATCCTTTACATGATGGATCGCGACGATGTTTCTGTTGGCGTTGGA GGGGAAGGTGGAGTTCTTGATGATGGCACTATTCTGCCTAATGTTGGGGGATACCTTCCCTTAATTGAACAGGGTGTGACAACAGCAGGAAGTTGCAGAT ACAGACAGGCAATTCCAGTTGGTCCTAGGGGCAGGCTCGACACTGATTCGAACTTTGGCCTCAGGAGATCATTCCTTCCTCAGGGAAATAGGAGATATCT CCCTTTTCGACAGCCTACGTCACAGCAAGTGCTGATAGAGAAAGTGTCTGCAGGTCCAATTACCATACTAATTACAGGAGCTCATACGAATGTAGCCATT TTTCTGATGAACAACCCGGATTTGAAGAAGAACATCGAGCATATTTACGTCATGGGAGGTGGTGTGAGGTCCAAAAACCCTGCAGGCTGTTGTCCTAAGA ATTCCAGTACTTCTTCTTCTTGCCAGCCAGGGCAGTGCGGTGATCCTGGAAATCTGTTTACTTCCTACACAAGTAACCCGTATGCTGAATTCAACATATT TGGAGACCCTTTTGCTGCATACCAGGTACCAATTTGGTCCGAAAACCCTGCAGGCTGTTGTCCTAAGAATTCCACTTCTTCTTCTTGCCAGCCAGGGCAG TGCGGTGATCCTGGAAATCTGTTTACTTCCTACACAAGTAACCCTTATGCTGAATTCAACATATTTGGAGACCCTTTTGCTGCATACCAGGTTATTCACT CAGGGGTTCCAATCACCCTTGTGGGTTTGGATGCAACGAATACGATTCCAACGTATAAGGAGTTCTTTGAGGTGTTTGAACAGAAACAAGAAACATATGA GGCACAGTACTGCTTCGAGTCCTTGAAAATGGCGCGGGACACTTGGTTGGATAACCAATTTTACTCAAGCTACTTCATGTGGGATTCTTTCACTTCTGGT GTGGCAGCTTCTATCATGCTGAATCAACATAACAAAAATGGGGAGAACGAGTTTGCAGAAATGGAGTACATGAACATAACTGTGGTGACATCGAACGAAC CTTACGGATTTCAAGATGGCTCGAATCCATTCTTTGATTGCCGCCAACTGCCAAAATTCGGTCTTGAGAAAGGTGGGGTTCATAGTGGCCACGTCCAAAC ATACCCTAGAGATCCATTCTGCATTGTCAATGATGGCAAAGGGAGATGCCAGGATGGCTTTACAAAGGAGACGATAGGTCCTGATTCGGTGAGAGTTCTT GTTGCGACTAAAGCAAAGCCTTCTACAGATCCTAATAGTCAACTAAAGAAGGCATTTTTCAAGAGCTTCTTGGATGTACTGAACCAACCTCAACAGAGTG GAAAGTTCAATTTCACAGACCAATTTCCTTACTACAGAGAGGTTCTTCACAAGCCACTCTTTGGAACCAAAACACCGGGGAAATTTGTTGTCTTTGACAT GGATATGAGTCCTGGAGATTTCCTAGCTCTCTTATATCTTCTTAAAGTATCTGCAGAAGTTATCAATCTAAAGGCAATCATAGTAAGCCCAACTGGATGG GCAAATGCTGCTACAATAGATGTTGTTTATGATTTACTCCACATGATGGGTCGCGATGACATACCGGTTGGGCTCGGAGAAGTGATTGGGACAAACCAGT CTGATCCAATGTTCCCATCTTCTGTTGGAGGCTGCAAGTATGTCAAGGCCATCCCTCATGGCAGCGGTGGATTTCTAGATTCAGACACTCTATTCGGGCT TGCTCGAGATTTGCCTCGAAGCCCCAGAAGGTACACCGCAGAGAACTCTGTTGCGTTTGGTGCCCCTAGAAATACTGATCATCCTGAACTTAGGCAGCCT CAAGCAGTGGAAGTCTGGGAGTCGGTTGTGGAGTCATTGGAACCAGGATCCAAGATTACATTGCTGACAAATGGACCTCTAACTAATCTAGCAAGGATTA TTCTGTCCAAGGGCTTCGAAAGCTCTACGGTGCAGGAGGTGTATGTTGTAGGAGGACATCTAAGCTATGGAAGATGGGACAAGGGCAACATTTTGGATAT GCTTCCCAACAAATATGCAGAGATGAACATGTTTCTTGATCCACTTGCTGCAGAAACAGTATTCGAATCCTCACTCAGCATAACTCTAATCCCACTTGAA ATTCAACGCAAAGTTAGTTCTTTTGCTCAAGTTAAGCAAATGCTGAAGTGGACAACAAATATGACCCCCGAGGCATTCTTTACCCACCGTTTGGTCTCGA TGCTTAACCGCCTGAAACAGATTCACCCCAGATATCAACACATGGATACATTCTTGGGAGAAATTCTCGGAGCAGTAGTTTTGGCTGGTGATCCTTCTAT ACTGAGGCCAATCCTGCAAGCTAAATCCATCAGGATCCTTGCTGATGGCGACGAGTCAACAGATGGCCGAATCTTAATTGAAGAAAATCAAGGTAAGTCA GTGAAAGTGTTGGAAGGTCTAGACCGAAATGCATACTACCAGGTTTTTGCAAATCAACTAGGGGGAAAGAAGCAATCAGCTGTTATAGGAAGCTTTCAGG AGCAGAAAAGAATGTGGAGCAGGCCACCAGTATAA
AA sequence Show only first row Show all	>Lus10012778 pacid=23142367 polypeptide=Lus10012778 locus=Lus10012778.g ID=Lus10012778.BGIv1.0 annot-version=v1.0 MHLHKNSWLVIIVLLSTSLVGSEIHAVKEEAKPRRILLDADVDTDDFFALLYLLKLNKSDFAVEAVTISANAWSDAGHAANHVYDILYMMDRDDVSVGVG GEGGVLDDGTILPNVGGYLPLIEQGVTTAGSCRYRQAIPVGPRGRLDTDSNFGLRRSFLPQGNRRYLPFRQPTSQQVLIEKVSAGPITILITGAHTNVAI FLMNNPDLKKNIEHIYVMGGGVRSKNPAGCCPKNSSTSSSCQPGQCGDPGNLFTSYTSNPYAEFNIFGDPFAAYQVPIWSENPAGCCPKNSTSSSCQPGQ CGDPGNLFTSYTSNPYAEFNIFGDPFAAYQVIHSGVPITLVGLDATNTIPTYKEFFEVFEQKQETYEAQYCFESLKMARDTWLDNQFYSSYFMWDSFTSG VAASIMLNQHNKNGENEFAEMEYMNITVVTSNEPYGFQDGSNPFFDCRQLPKFGLEKGGVHSGHVQTYPRDPFCIVNDGKGRCQDGFTKETIGPDSVRVL VATKAKPSTDPNSQLKKAFFKSFLDVLNQPQQSGKFNFTDQFPYYREVLHKPLFGTKTPGKFVVFDMDMSPGDFLALLYLLKVSAEVINLKAIIVSPTGW ANAATIDVVYDLLHMMGRDDIPVGLGEVIGTNQSDPMFPSSVGGCKYVKAIPHGSGGFLDSDTLFGLARDLPRSPRRYTAENSVAFGAPRNTDHPELRQP QAVEVWESVVESLEPGSKITLLTNGPLTNLARIILSKGFESSTVQEVYVVGGHLSYGRWDKGNILDMLPNKYAEMNMFLDPLAAETVFESSLSITLIPLE IQRKVSSFAQVKQMLKWTTNMTPEAFFTHRLVSMLNRLKQIHPRYQHMDTFLGEILGAVVLAGDPSILRPILQAKSIRILADGDESTDGRILIEENQGKS VKVLEGLDRNAYYQVFANQLGGKKQSAVIGSFQEQKRMWSRPPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10012778 [exp]	0	1
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	1.0	0.9604
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10033998 [exp]	1.4	0.9286
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	7.9	0.8990
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	10.0	0.9147
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	13.3	0.9197
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	14.5	0.8988
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	15.3	0.9130
AT5G09730		ATBXL3, XYL3, B...	beta-xylosidase 3 (.1)		Lus10025036 [exp]	15.8	0.8794
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	17.4	0.8842
AT5G17890		CHS3, DAR4	CHILLING SENSITIVE 3, DA1-rela...		Lus10025852 [exp]	18.3	0.8833

Compare expression of checked genes

Lus10012778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.