Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03020 614 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 91 / 6e-20 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 79 / 5e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 69 / 6e-12 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G16750 66 / 4e-11 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G11160 64 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 63 / 1e-10 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G54520 62 / 5e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 61 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 60 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033996 [exp] 928 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10042682 [exp] 607 / 0 AT4G03020 749 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10029621 [exp] 536 / 0 AT4G03020 658 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 86 / 6e-18 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 82 / 1e-16 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 79 / 7e-16 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 77 / 3e-15 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 72 / 1e-13 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001046 [exp] 72 / 4e-13 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G026800 [exp] 668 / 0 AT4G03020 676 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G136000 [exp] 630 / 0 AT4G03020 741 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G197200 [exp] 543 / 0 AT4G03020 534 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 89 / 2e-19 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 70 / 1e-12 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 69 / 2e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 68 / 2e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 67 / 7e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 65 / 6e-11 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.011G045500 [exp] 65 / 8e-11 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10012779 pacid=23142346 polypeptide=Lus10012779 locus=Lus10012779.g ID=Lus10012779.BGIv1.0 annot-version=v1.0 ATGAGGAGGCACAAATTTTTGCGAGCTTGTGACGAGAGAGAAAATGCTGAAGCGGAATCGAATAGAGCTGGCGGAGTTGAAGGTGGAGAGAGCTCCAATC AATTTGATCACGAGATTGTGCAGCTGACGAAGCTTAGGTCAGAGCCTCATCAACTATTCACTCGAGACTCGCTCGCAGGCGGCGTAAGGCCCAGAGCCCC TGTCTCCACCTTGAAGATGTTGGCCGGCAGGGAGGCTAATTGCTCAGGAAGAGGGAGATTCTCATCGGCCGATGGCTGCCATGTTCTGAGCAGGTATGTG CCTGCCAATTCCCCTGTTGAGGTCGACAACACGAGGAGCCGGGCTTATGTGTCTCAGTTCTCATCGGATGGATCGCTTTTCATTGCTGGCTTTCAGGGGA GCCACATTAGGATATATAATGTGGAGAAAGGATGGCAAGTTCATAAGAATATCATGGCCAGGAGCTTGCGCTGGACTATTACTGATACTTGTCTTTCACC CGATCGGCGATATCTTGTGTATGCGAGTCTGTCGCCTATGGTACATATCGTTGATGTTGGTTCACCTACAACCGAGTCACTTGCAAATGTTACGGAACTC CATGATGGTTTGGATTTTTCCAGCTCCGATTATGATGATGAAGATGAATTTGGTATCTTCTCTATAAAATTTTCAACTGACGGAAAAGAGCTCGTTGCAG CAACTAGTGATGACTCGATATATGTTTATGACCTTCAAGCCAATACTCGGACCCTCCACATCCCCGCCCACCAGTCTGATGTGAATACAGTATGCTTTGC TGATGAAACTGGCCATGTTATTTACTCTGGAAGCGATGACTACTTATGTAAGGTTTGGGACAGGCGGTGTTTTAACAGCAGAGGGCAAGCAGCAGGGGTA TTGATGGGGCATCTGGAAGGTGTCACGTTCATTGACAGTCGTGGAGATGGGCGTTATTTGATTTCGAATGGTAAAGATCAGACCACGAAGCTCTGGGATA TTAGAAAGATGACCTCAAATGCAATCTACTCTCCAAGAATAAGAGATCCAGACTGGGACTACAGATGGATGGAATACCCGCAGCAGGCGAAAACGTTGAA GCATCCTCGTGATCAGTCGTTGGCTACTTACAGTGGTCATTCAGTTCTACGAACCCTAATACGATGCTACTTCTCCCCCGAATACAGTACTGGTAGGAAG TATATCTACACAGGATCTAGCGACTGTTTGGTTTATATATATGATCTGGTGAGTGGGGATCTAGTGGGTTGCTTGGATTACCATCAAGGTCCAGTGAGGG ATTGCAGTTGGCACCCGGTGTATCCAATGCTGGTAAGCTCTTCGTGGGATGGACGCATCGTGAAATGGGAGTTCCCTGGTCCTCCTTATGATGATGAATC GCCTGTAGTAGTACCAATATCTGCAAGGAAGAAGAAAAATCGAAGGCAGTTCATATACTAA
AA sequence Show only first row Show all	>Lus10012779 pacid=23142346 polypeptide=Lus10012779 locus=Lus10012779.g ID=Lus10012779.BGIv1.0 annot-version=v1.0 MRRHKFLRACDERENAEAESNRAGGVEGGESSNQFDHEIVQLTKLRSEPHQLFTRDSLAGGVRPRAPVSTLKMLAGREANCSGRGRFSSADGCHVLSRYV PANSPVEVDNTRSRAYVSQFSSDGSLFIAGFQGSHIRIYNVEKGWQVHKNIMARSLRWTITDTCLSPDRRYLVYASLSPMVHIVDVGSPTTESLANVTEL HDGLDFSSSDYDDEDEFGIFSIKFSTDGKELVAATSDDSIYVYDLQANTRTLHIPAHQSDVNTVCFADETGHVIYSGSDDYLCKVWDRRCFNSRGQAAGV LMGHLEGVTFIDSRGDGRYLISNGKDQTTKLWDIRKMTSNAIYSPRIRDPDWDYRWMEYPQQAKTLKHPRDQSLATYSGHSVLRTLIRCYFSPEYSTGRK YIYTGSSDCLVYIYDLVSGDLVGCLDYHQGPVRDCSWHPVYPMLVSSSWDGRIVKWEFPGPPYDDESPVVVPISARKKKNRRQFIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	1.4	0.8429
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10024801 [exp]	2.0	0.8487
AT5G22850			Eukaryotic aspartyl protease f...		Lus10021397 [exp]	4.2	0.8308
AT4G22840			Sodium Bile acid symporter fam...		Lus10008914 [exp]	6.0	0.7751
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	6.3	0.8123
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10019537 [exp]	8.0	0.8142
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	10.1	0.7991
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10005868 [exp]	10.2	0.7606
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10041842 [exp]	10.2	0.7894
AT4G26450		WIP1	unknown protein		Lus10027095 [exp]	10.7	0.7327

Compare expression of checked genes

Lus10012779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.