Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18840 660 / 0 Major facilitator superfamily protein (.1) AT2G48020 565 / 0 Major facilitator superfamily protein (.1.2) AT3G05150 542 / 0 Major facilitator superfamily protein (.1) AT1G54730 520 / 0 Major facilitator superfamily protein (.1.2.3) AT5G27350 406 / 7e-138 SFP1 Major facilitator superfamily protein (.1) AT1G08930 406 / 1e-137 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G20460 402 / 5e-136 Major facilitator superfamily protein (.1) AT3G05165 396 / 4e-134 Major facilitator superfamily protein (.1.2.3.4.5) AT1G08920 395 / 7e-134 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT3G05160 392 / 8e-133 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029629 [exp] 572 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10033995 [exp] 561 / 0 AT5G18840 411 / 9e-142 Major facilitator superfamily protein (.1) Lus10008183 [exp] 558 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 541 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 508 / 8e-179 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 509 / 1e-178 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 504 / 2e-176 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035354 [exp] 501 / 4e-175 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10008182 [exp] 482 / 2e-167 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G026500 [exp] 718 / 0 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 578 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 552 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027500 [exp] 523 / 0 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 453 / 3e-156 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 444 / 1e-152 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 434 / 4e-149 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 415 / 2e-141 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 399 / 4e-135 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 396 / 7e-134 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10012780 pacid=23142343 polypeptide=Lus10012780 locus=Lus10012780.g ID=Lus10012780.BGIv1.0 annot-version=v1.0 ATGGCGATAGGGAATTTGAAGGATGTGGAGAGTGGTGAGATTACCTATGGGCTGGACGACCTGGAGGAGCCATTGTTGGACGGGAAATTAGCTGTGAGCT CTGGTGGGGAGGATGAATCAAGTATTGAAGATAGTAATGATGGGTCGTCGTCGTCATCCATTGGGATGGTTCTGCTCAGCACTGCTGTCGCCGTTTGTGG ATCTTTCGAGTTTGGCTCTTGTGTTGGTTACTCTGCACCTGCTCAATCTGCAATCAGGGAAGATCTCAAGCTCTCTTTGCCTCAGTACTCCATGTTCGGC TCAATATTAACAATTGGAGCAATGCTTGGAGCTGTGACAAGTGGTAGAACTGCAGATTTCATCGGCCGAAAAGGGGCAATGAGGATGTCTGCTGTGTTCT GCATTATGGGATGGCTGGCGATCTTCTTCTCTACGGAAGCTTTGTCCCTTGACATCGGAAGGTTCTTCACCGGATATGGAATTGGAGTATTCTCCTACGT GGTTCCTATATTCATAGCAGAAATCTCTCCCAAGAATCTCCGGGGTGGGCTGACTACACTGAATCAGCTCATGATAGTCATTGGAGCATCCACTGCCTTC TTACTTGGCTCAGTCATAACATGGAGATCTCTAGCACTAACTGGAATTCTTCCCTGCATATGCCTGCTTACTGGACTCTTCATCGTTCCTGAATCTCCTA GATGGCTGGCTAAAGTTGGCCGCGAGAAGGAATTCCAAGTTGCGTTGCAGAGACTTCGTGGCAAGGGCACTGATATCACCCGTGAAGCTGTTGAAATTCA GCTTAATATCGAGGCACTTCAAAACCTTCCAAAAGCAAGTATGGTTGATCTGTTCCATCCCAAGTACATCCGTTCCACCATTATTGGAGTTGCACTCATG GTATTCCAGCAGTTTTGTGGGATCAATGGCATTGGCTTCTACGCAAGTGAAACATTTGCCTCAGCAGGGCCTTCATTGGCGAAAATTGGAACAATAGCAT ATGCATGTATCCAAGTCCCAATCACTGTAGCAGGAGCAATGCTGATGGACAAATCTGGAAGAAGACCACTCATAATGGTTTCTGCTACTGGTACATTCCT AGGCTGCTCCATGGCTGGTGCTTCTTTCTTCTTCAAGAGCCACGATTTGCTGCTCGACTGGGTGCCTATCCTAGCTGTATCTGGCGTACTGGTGTACATT TCTGCATTCTCAATTGGAATGGGAGCAGTGCCCTGGGTGATCATGTCTGAGATCTTCCCCATAAACATGAAGGGAGTGGGAGGAAGCCTGGTGGTGTTGG TAAATTGGCTGGGCGCATGGGCAGTCTCCTTCACATTCAATTTCTTAATGAGCTGGAGTTCCTCGGGGACATTCTTCCTCTACTCCGGCTTCTCAATCCT GACGATTCTGTTCGTCGCTAAATTCGTTCCCGAAACCAAAGGAAAAACCTTGGAAGAGATTCAGGAATCCATCAACAACCCGTAG
AA sequence Show only first row Show all	>Lus10012780 pacid=23142343 polypeptide=Lus10012780 locus=Lus10012780.g ID=Lus10012780.BGIv1.0 annot-version=v1.0 MAIGNLKDVESGEITYGLDDLEEPLLDGKLAVSSGGEDESSIEDSNDGSSSSSIGMVLLSTAVAVCGSFEFGSCVGYSAPAQSAIREDLKLSLPQYSMFG SILTIGAMLGAVTSGRTADFIGRKGAMRMSAVFCIMGWLAIFFSTEALSLDIGRFFTGYGIGVFSYVVPIFIAEISPKNLRGGLTTLNQLMIVIGASTAF LLGSVITWRSLALTGILPCICLLTGLFIVPESPRWLAKVGREKEFQVALQRLRGKGTDITREAVEIQLNIEALQNLPKASMVDLFHPKYIRSTIIGVALM VFQQFCGINGIGFYASETFASAGPSLAKIGTIAYACIQVPITVAGAMLMDKSGRRPLIMVSATGTFLGCSMAGASFFFKSHDLLLDWVPILAVSGVLVYI SAFSIGMGAVPWVIMSEIFPINMKGVGGSLVVLVNWLGAWAVSFTFNFLMSWSSSGTFFLYSGFSILTILFVAKFVPETKGKTLEEIQESINNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18840			Major facilitator superfamily ...		Lus10012780 [exp]	0	1
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10009718 [exp]	2.0	0.9408
AT5G10530			Concanavalin A-like lectin pro...		Lus10019234 [exp]	3.6	0.8814
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	3.7	0.9090
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	7.4	0.9004
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10037234 [exp]	9.2	0.9041
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	12.2	0.9051
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013137 [exp]	20.3	0.8738
AT5G37450			Leucine-rich repeat protein ki...		Lus10002278 [exp]	21.9	0.8886
AT5G66780			unknown protein		Lus10014313 [exp]	23.0	0.8258
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	26.5	0.8951

Compare expression of checked genes

Lus10012780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.