Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18830 611 / 0 SBP ATSPL7, SPL7 squamosa promoter binding protein-like 7 (.1.2.3) AT1G76580 110 / 1e-24 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G47070 107 / 8e-24 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G20980 100 / 2e-21 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT3G60030 96 / 4e-20 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT3G15270 81 / 3e-17 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT1G27360 84 / 8e-17 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT1G02065 82 / 2e-16 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT2G33810 77 / 2e-16 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G53160 77 / 3e-16 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033993 [exp] 1396 / 0 AT5G18830 661 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10009984 [exp] 108 / 9e-24 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10038043 [exp] 104 / 1e-22 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10010071 [exp] 101 / 8e-22 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10028181 [exp] 87 / 6e-18 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10016275 [exp] 84 / 2e-17 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10042882 [exp] 84 / 5e-17 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10023818 [exp] 84 / 8e-17 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 84 / 1e-16 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197000 [exp] 750 / 0 AT5G18830 657 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.010G026200 [exp] 728 / 0 AT5G18830 664 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.008G098600 [exp] 129 / 2e-30 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.010G154000 [exp] 124 / 9e-29 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.002G002400 [exp] 119 / 3e-27 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.014G114300 [exp] 117 / 8e-27 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.005G258700 [exp] 117 / 1e-26 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G188700 [exp] 115 / 3e-26 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.008G097900 [exp] 87 / 1e-17 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.014G057700 [exp] 85 / 1e-17 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10012782 pacid=23142365 polypeptide=Lus10012782 locus=Lus10012782.g ID=Lus10012782.BGIv1.0 annot-version=v1.0 ATGGAACCACCATCTCCTCCTCCCTCTGCTCCGCTCGACGACCGAATGGAATCTCTGCATCGTCATCCGCCGGTCACCGAATCGTATCCTCCTTCCTCAT CATCTCCCGGCGCATGGGAATTAAGCGATCTCCTCGACTTCAACATAGACGATCATTTCCCTCTCCCCTTCGACTCCCTTGATCTTCCCGACGACAATCC TGATACCTACTTTTCCCCGCACGATAATCCGCCTACTGAGCGGGTTAGGAAACGGGACCCGAGGTCCACCTGCTCCAATTTCTTGGCCGGTAGGGTTCCC TGCGCCTGCCCGGAGCTGGATGAGAAGTTGGAGCAGGAGGAAGGTGTCCCCGGAAAGAAGCGGGCCCGGGTGGCTCGGGGTGGACCCGGCATGTACAGGT GTCAGGTTCCTGGCTGCGAGGTGGATATCACCGAGCTTAAAGGATACCATCGGCGGCATAGGGTATGTTTGCGCTGCGCGAATGCGACAGCTGTTAAGAT TGATGGAGAGACTAAGAGATACTGTCAGCAGTGTGGCAAGTTTCATTTGCTTCCTGATTTTGACGAAGGAAAACGGAGCTGTAGACGGAAATTAGAGCGT CACAACAATAGGAGGCGTAGAAAGTCAGTTAATGGTAATGTTCCTGCGAATGAAGGGACTAGCATGGATAATTTGCAAGCTGAAGATGCTGCTTGCAATG GAGAAACTGAAAAAGACGGTTTATCCTTTCAGATTGTGGGGAAGGAAGCTCTTCTTGAGATTGAAGATGGACCCGGATTCCAGTCTGAATCCCAGAAGGT GAACAGCGATAGTGGTGCTGCTTCAGCTGAAACACTATTTGATGCTGGAAATGATGATTCTGGTGGGAAGTATGATTCCAAGTTTTCGCGCTCGCCTTCT AATTTTGACAACAGAACTGCTTACTCATCGCTGTGTCCAACAGGTCGGGTCTCATTCAAGCTTTATGATTGGAATCCCGCAGAGTTTCCAAGACGGCTTC GTCACCAAATTTTCCAGTGGTTGGCTAGTATGCCTGTTGAGTTAGAAGCATATGTTCGTCCTGGTTGCACGAATTTGACAGTGTTTGCTGCAATGCCAAC ACGCATGTGGGCGAAGTTGCTCGAAGATCCTCTATCGCATGTGCAAAAGTTTGTTCTTGCCCCTGGGTCAATGCTGTCTGGAAAAGGCCGTATGATTGTT TATCTGGATAATTTGATGTTCCGAGTTTTGAAAGGTGGAACTTCTGTGATGCAACTCAATGTTGGAACGCAATCCCCCAGGCTTCACTACGTTCATCCCA ACTGCTTTGAGGCTGGGAAGCCAATGGAGTTTGTTGCTTGCGGAAGCAATCTATTCCAAAGCAATTTCCGGCTGCTGGTGTCGTTTGACGGGAAGTATCT GGCTTATGATTCCTGTGTTGGGTTACCTAGTGGTGGTGTTGATGGGAATGCTAGCAGAGATCATCAGTTGTGCAAGATATCTATTCCTCATGTTGATCCT AATATCTTCGGTCCTGCATTTATTGAGGTTGAAAATGGAAGTGGTCTATCTAACTTCATTCCTGTGCTCGTTGGCGACAGACAGATCTGTTCTGAAATGG AAGTAATACAGCAAAGATTAGAGGTTTTGAATAGTGCTACGGGATTTCACTGTGAGATTTCACAAACCAGGCAAAGAATACTCTCTGAATTAATCGTGGA CGTAGCATGGTTGTTGAAGGCACCTTCTCAGGATAGAATTAGGCAAACGGCATCATCACTACAGATCCAAAGATTTGTTTCTATGTTGCAGTTTTTGATA CAGCACGACTCTACATTCATTTTGGGAAAAGTTTTGTCCAATCTGAAGATCATAGTCGGTGCAATAAGTTTAGAAAATGTCATCAATGGCAATATGGATG CTGATGCCAAGCTATTAAAACAGTATATGGATGAAGCCAGTCGTTTTCTTCACCAAAAAGCAAATAGAAGCAATGGTTTAGCTTTCGTGCCAGAGCATTC TTCATCCCAAAAGTGTGATGTTGATAAATGTTGCCCTCGAACAGATTTTCGGTTGTTTGCTGCATTGTCCGATGAGGACATGGAGAATAGACTGAATAAT AGTTTGAGATTATCAGAAGGTTCAAGTCCTGATGTTAGAAGTGACGAGATGCCGCTCCTAAACAATGGGGATGTAGTGATGGATGTGAAGCTGGTGAAGG AAAGGCCGGGGAAGTCGTGCAGCGTGATTTTGTCGAACCGAGTGTTGAAGTCACGGGCTGCAATGTTTGTAATTCCTACAGTTGCAGTGTGTGTGGGAGT GTGCGCAGTGCTACTCCATCCTAACAGTGTTGGCAAAATGGTGGTATCCATTCGTAGCTGCTGGACTGAAAGTAGATACTAA
AA sequence Show only first row Show all	>Lus10012782 pacid=23142365 polypeptide=Lus10012782 locus=Lus10012782.g ID=Lus10012782.BGIv1.0 annot-version=v1.0 MEPPSPPPSAPLDDRMESLHRHPPVTESYPPSSSSPGAWELSDLLDFNIDDHFPLPFDSLDLPDDNPDTYFSPHDNPPTERVRKRDPRSTCSNFLAGRVP CACPELDEKLEQEEGVPGKKRARVARGGPGMYRCQVPGCEVDITELKGYHRRHRVCLRCANATAVKIDGETKRYCQQCGKFHLLPDFDEGKRSCRRKLER HNNRRRRKSVNGNVPANEGTSMDNLQAEDAACNGETEKDGLSFQIVGKEALLEIEDGPGFQSESQKVNSDSGAASAETLFDAGNDDSGGKYDSKFSRSPS NFDNRTAYSSLCPTGRVSFKLYDWNPAEFPRRLRHQIFQWLASMPVELEAYVRPGCTNLTVFAAMPTRMWAKLLEDPLSHVQKFVLAPGSMLSGKGRMIV YLDNLMFRVLKGGTSVMQLNVGTQSPRLHYVHPNCFEAGKPMEFVACGSNLFQSNFRLLVSFDGKYLAYDSCVGLPSGGVDGNASRDHQLCKISIPHVDP NIFGPAFIEVENGSGLSNFIPVLVGDRQICSEMEVIQQRLEVLNSATGFHCEISQTRQRILSELIVDVAWLLKAPSQDRIRQTASSLQIQRFVSMLQFLI QHDSTFILGKVLSNLKIIVGAISLENVINGNMDADAKLLKQYMDEASRFLHQKANRSNGLAFVPEHSSSQKCDVDKCCPRTDFRLFAALSDEDMENRLNN SLRLSEGSSPDVRSDEMPLLNNGDVVMDVKLVKERPGKSCSVILSNRVLKSRAAMFVIPTVAVCVGVCAVLLHPNSVGKMVVSIRSCWTESRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10012782 [exp]	0	1
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	1.0	0.9230
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10013318 [exp]	8.5	0.8694
AT1G47330			CBS domain-containing protein ...		Lus10032715 [exp]	9.9	0.8916
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	12.2	0.9098
AT2G15860			unknown protein		Lus10023852 [exp]	16.1	0.8373
AT5G20120			unknown protein		Lus10019426 [exp]	19.1	0.8593
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	21.8	0.8804
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	22.4	0.8999
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	22.4	0.8985
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	24.8	0.8839

Compare expression of checked genes

Lus10012782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.