Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033992 [exp] 44 / 2e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012783 pacid=23142366 polypeptide=Lus10012783 locus=Lus10012783.g ID=Lus10012783.BGIv1.0 annot-version=v1.0 ATGCCAAGGTACCGGAGTCGTAGCAGGAGCTACAGCCCTCGTCGCCGCAGCAGAAGCCCGCCTCGTCTCCGCAAGCGGTACGACGATGATGTCGATGAAC CTCGTGATCGATTCCGTGAGAGTCGCTCCCACAGAGACCGTCGCTCTCCTGCTCCTTCTGGTTTGCTCGTCCGCAATCTCCCTATGGACGCTAGATGCTT GAATACGTCGATGCGGTATTACCTGGCAATAGTTCCCCCCAGCAATATTACAATTGTAGTGTTCAGTGATGTGCAGCATAGTATTGCCGAGTGGTGTCAA GAGAAGTCGTTATAA
AA sequence Show only first row Show all	>Lus10012783 pacid=23142366 polypeptide=Lus10012783 locus=Lus10012783.g ID=Lus10012783.BGIv1.0 annot-version=v1.0 MPRYRSRSRSYSPRRRSRSPPRLRKRYDDDVDEPRDRFRESRSHRDRRSPAPSGLLVRNLPMDARCLNTSMRYYLAIVPPSNITIVVFSDVQHSIAEWCQ EKSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18810		SCL28, At-SCL28	SC35-like splicing factor 28 (...		Lus10012783 [exp]	0	1
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	7.5	0.8822
AT1G27595			unknown protein		Lus10007230 [exp]	14.1	0.8733
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	16.2	0.8641
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022944 [exp]	20.3	0.8695
AT5G35910			Polynucleotidyl transferase, r...		Lus10020301 [exp]	22.8	0.8332
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	23.8	0.8662
AT1G27595			unknown protein		Lus10028229 [exp]	27.1	0.8672
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	27.7	0.8716
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003700 [exp]	34.4	0.8663
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10037481 [exp]	37.1	0.8523

Compare expression of checked genes

Lus10012783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.