Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44710 300 / 3e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G00830 130 / 5e-32 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G52660 102 / 1e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G71770 79 / 7e-15 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G22760 77 / 3e-14 PAB3 poly(A) binding protein 3 (.1) AT4G34110 74 / 2e-13 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G23350 64 / 3e-10 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G49760 63 / 4e-10 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT4G16280 61 / 2e-09 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT3G16380 58 / 1e-08 PAB6 poly(A) binding protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033990 [exp] 1184 / 0 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028162 [exp] 323 / 3e-99 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002689 [exp] 126 / 1e-30 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10030207 [exp] 124 / 6e-30 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10021351 [exp] 123 / 2e-29 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043390 [exp] 110 / 1e-25 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 110 / 2e-25 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002835 [exp] 76 / 8e-14 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 75 / 1e-13 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G116400 [exp] 636 / 0 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 622 / 0 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 333 / 9e-103 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 327 / 8e-101 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G212400 [exp] 134 / 3e-33 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 131 / 3e-32 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G178200 [exp] 120 / 8e-29 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.014G104500 [exp] 118 / 5e-28 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.004G201900 [exp] 111 / 1e-25 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 109 / 4e-25 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10012785 pacid=23142348 polypeptide=Lus10012785 locus=Lus10012785.g ID=Lus10012785.BGIv1.0 annot-version=v1.0 ATGGAGAGGAAGCTTGCAGCGGAATCTGTAGCTACAAAAGCTTCAGAACTGGAACTCGAACCCGGTTCACCAGCTAAATCCTCCGAACAGACCATGGACG AGGAGGTTGAACCACCTTCTCCGACTGCAGTTCCCGATGCAAAAGCTGATCAATCAGAAGAGGCTGCTCAACCTACTCCTGATGCTCGTGCGGGAACTAT AGAGAAAGCACAGATTACGCTAGAATTGGATTTGTCTGCCAAAGTGATCCATAAGGCTGATCTCGTTAATCCAGGAGGAAGTAATGCGACTCAAGTCATA GGAGCATATGCTTCATCAGCGCAAGAAGAGGATGCTCATGTTGAGGTACATGAGGGTCCGCTGGACTTAGAAGCAGTGAAGGAGGTCCCAAAAGAGACTG TGGAAGGAAGTCTTGCCGATAAGGGGCAATGTGAAGCTGATGCAGTTATTCGAGAAGGAAGTAATGCGACTGAAGTCGTAGGAGGAATTAATTCTTCGGC AGGGCAAGGGGAATGTGCTCATGATCAGGGATATGGAGATCGCTTGGACTTGGGAGGACCTGGTGAGGATAAATTGACAGAAGATGACAATGTGGAGCGT GCTGGTGATGTTATGGTATTGGAGGAGGAACATAAGCAACTAACTGCTGTTGCAGAAGAACGCAAAACTAAGAAAGAGTATGAGATTTTTGTAGGTGGTC TGGGTATGGATGCTACTGAGGAGCATGTGAAGAAGGTTTTTGAATATGTTGGTCCAGTAGTTGTAGTTCGACTGTACAAGGATCTTTCAACAGACAAAAA GACAGGCTACGCATTTGTGAGGTTTTCCAATAAGGATCATGTTAAGAGAGCTTTGTCAGAAATGAAAAACCCTGTGATTTGTGGAAAACGATGTGCGACG GCCCCAAGCGAGGACAATGACACGTTGTTTCTTGGCAATATATGCAACACGTGGACCAAAGAAGCTATAGGGCAAACACTAAAGGATTATGGTGTAGAAC ACGTTGAAAGCATCAACCTTGTTTCTGATGCTCAGCATGATGGAAGAAGTCGCGGGTTCGCATTTCTCGAGTTCTCATGCCATGCTGATGCGATGCTGGC GTATAAAAGGCTCCAGAAGCCAGATGCTGTCTTTGGCCATTCTGAGAGAACAGCAAAAGTGGCATTTGCTGAATCCATAAGCGAGCCTGACCCTCAAGTA ATGGCTGAAGTGAAAACGGTATTTCTTGATGGCCTTCCCTTAAACTGGGATGAAGACCATGTGAGGGAACGTGTTAAAGGATATGGGGAAATCACACGAG TAGCACTGGCCAGGAATATGCGAACAGCTAAGAGAAAGGATTTTGGGTTTGTGGATTTCTCCACTCATTGTGCTGCCATTTCCTGTATTAATGGAATAAA TGATGCAGAAACCAGTCGTGGAAACTCAACGGCAAAAGTGAGAGCCAGGCTTTCCAATCCTCTACCTAAGACTCAAGCTGTGAAGGGAGGAATGCGTGGT GGTTTTCTAATCGGTCATGTTGGCCGTGCCGATACTGTGAACTCTTCAAGATCTGGTAGGGGAGTCACACGAGGTGGGCGTCAGTTTAACTCGACTAATA TTCAGCGGGGTAGGGGATTCTATCAAAGGGGGCGTGGCCAAACTTACAGAGTGGCTCCTGAGGACTATGCATTGCACAATAGATATGATACATTTCATGG AAGGACTCCTGAACGAGGAGGAAGAAGGGCTCCTCTAGGAGGTAGTTATCAACCAGCTGATAGAGGTGTTCCTTTTGCTGGCCCATATGGATCCAATGTG AACAGAACTTGGCATGATGTGCATGAAGGGGGGTCTAGTGACCAGAATCATTTTAGGAGACAACCCTTTTCTGAAGAAGCATTTGATGGACCTTATGGTG GAAGGCGATACGAGGATCCTTACCTTTACCATGAACCCATGCATGGAATGAAGCGACCGTTTTACGTGACTGATCCCGAACCTAATTATGGAGAACCAAG TAGATACCGCCCTCGAATGGATTATAATCATCCTGCTGTTTCATACAATGGACCACGTTATCTTGGTGAGGATACTTATCCGCACAGAGGTGCTCCGTAC CCGCATGATTACTATGGCTCTGATCACAGGCCATATTGTCCTTATTACAGCGGTGAATGGGGTTATAGGGGTGGTTATTATCGTTAG
AA sequence Show only first row Show all	>Lus10012785 pacid=23142348 polypeptide=Lus10012785 locus=Lus10012785.g ID=Lus10012785.BGIv1.0 annot-version=v1.0 MERKLAAESVATKASELELEPGSPAKSSEQTMDEEVEPPSPTAVPDAKADQSEEAAQPTPDARAGTIEKAQITLELDLSAKVIHKADLVNPGGSNATQVI GAYASSAQEEDAHVEVHEGPLDLEAVKEVPKETVEGSLADKGQCEADAVIREGSNATEVVGGINSSAGQGECAHDQGYGDRLDLGGPGEDKLTEDDNVER AGDVMVLEEEHKQLTAVAEERKTKKEYEIFVGGLGMDATEEHVKKVFEYVGPVVVVRLYKDLSTDKKTGYAFVRFSNKDHVKRALSEMKNPVICGKRCAT APSEDNDTLFLGNICNTWTKEAIGQTLKDYGVEHVESINLVSDAQHDGRSRGFAFLEFSCHADAMLAYKRLQKPDAVFGHSERTAKVAFAESISEPDPQV MAEVKTVFLDGLPLNWDEDHVRERVKGYGEITRVALARNMRTAKRKDFGFVDFSTHCAAISCINGINDAETSRGNSTAKVRARLSNPLPKTQAVKGGMRG GFLIGHVGRADTVNSSRSGRGVTRGGRQFNSTNIQRGRGFYQRGRGQTYRVAPEDYALHNRYDTFHGRTPERGGRRAPLGGSYQPADRGVPFAGPYGSNV NRTWHDVHEGGSSDQNHFRRQPFSEEAFDGPYGGRRYEDPYLYHEPMHGMKRPFYVTDPEPNYGEPSRYRPRMDYNHPAVSYNGPRYLGEDTYPHRGAPY PHDYYGSDHRPYCPYYSGEWGYRGGYYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10012785 [exp]	0	1
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	10.5	0.7381
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	14.4	0.7460
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10037778 [exp]	18.3	0.7162
AT4G25380		AtSAP10, SAP10	Arabidopsis thaliana stress-as...		Lus10038901 [exp]	21.8	0.7321
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10025206 [exp]	25.3	0.7308
AT4G14450		ATBET12	unknown protein		Lus10021208 [exp]	25.7	0.7374
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	27.8	0.7265
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10011847 [exp]	34.6	0.7041
					Lus10012576 [exp]	38.5	0.7140
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	43.3	0.6846

Compare expression of checked genes

Lus10012785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.