Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49000 382 / 2e-127 RNA polymerase III subunit RPC82 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033989 [exp] 809 / 0 AT3G49000 364 / 1e-119 RNA polymerase III subunit RPC82 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144900 [exp] 497 / 2e-172 AT3G49000 442 / 4e-151 RNA polymerase III subunit RPC82 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF05645 [flax] [poplar] RNA_pol_Rpc82 RNA polymerase III subunit RPC82 CL0123 [flax] [poplar] HTH PF08221 [flax] [poplar] HTH_9 RNA polymerase III subunit RPC82 helix-turn-helix domain
Representative CDS sequence Show only first row Show all	>Lus10012787 pacid=23142356 polypeptide=Lus10012787 locus=Lus10012787.g ID=Lus10012787.BGIv1.0 annot-version=v1.0 ATGATACCAAAACATGGCATCATGTACGCCGTCCATCTCATCACCAATCACTTCGGAGATCTCGTTGCTAAAGTATGTGAATGTCTACTGCGCAACGGAC CATTGCCACTCCACGCCATAGCTCGACGAACTGACCTCTCCCACACTAAAGTTAAGAACAGTTTACTCGTCTTAATCCAACACAACTGTGTGCAGGCTTT CAGCCTAGATGAAGCTGAGGATGGTGGAAAGATATATTTGCAGTATATAGCATTGCTTGCTAACATACTTCATCGAGCGAGGTTTTCCAAGTTCATGGAT GTGGTGTCAAAAGAACTTGGTGGACCGTGTGGGGAGATCCTCAAAGGTTTGCTAGAACATGGTAGGCTTACAGTTAAGCAAATTTTGGACCGAGCTGGCA AAAATGTGAAGGAAAGTACCAAAACAGTGTGTTTAGGTCTCAACCCAGTGCAAGAGAACCTTCATAAACTTGTAATGTCCCATTACGTTGAATCCTGTCC TGCCTCGGAACCTGCAGTTCTACCACAGGCTGATGACCCTGCTGCAAAGAGGCGAGCTGCGAAATCTGATAAGATAATTGTGGAAACAGTTACTCTGGAG CAGCGTGTTATGTCAGCAGCAATGCCTTCAGAAGTAAAAAGATTCTTCTTTGCTCCTAACACAGACAAAATAGCTGATAACGAGCAGAAAATGGATCAAT CTCCTAGTAAAGATGCTGGGAAAAAGCGCAAGCTTGGTGATATGGAGTCTGATACAGCAGTTGCAGAAGAGGATGAATTCATGTGGCGTGCAAATTTTGA GGAATTAGCTCGTCGTCTTAGACATAAGGTCTGCATCGATACTGCAAAAGCACGTTTAGATGATGAAGCTGCAATTGTTCTAAGTGCAATGATTGAAGGA TCTAGAACTAAAGAGAAGAAAGTTAAAACTGCAAGCTCAGTACCATTGTCGTTGAATTCTATCTATGAAGAGGTGATGAAGAACGAAAAGAACCACAACA TGACGTTCGATCACGTCAGAACTTGCCTTCATCAAATGAGGTCTTCTCCAGCCTTTGTAAAAGGGGCTGATGAATACAGTATAGATTTCGCACAAATCAT TGAAGCAGCTCAGAGTGAAGAGGTCGAAACCCTTATTTTGAAAAGGTATGGAAGGGATGCCTATACAATGTTTCGGCTACTGTCGAGGGCTGGCTGCCTT ATGGAGTCGGACAAGATTGCTGATACTGTATTTGTCGATAAGAAAGGGGCAACGAAAACTCTGTACAGAATGTGGGAGGACGGATACTTGATCATGCAGA AACTGGTTCTAGGTGGTTCTGCTGGTGCCAGTGGATATGGGGGTTCCACGTTCTTATTATGGAAAGTAAACAAGAAGAATCTTTTAGAGACTGTTCTGGA CGAGATGTTTCATGCTGCGTTAAATTTGAACCTACGTGCAGCACATGAGCTCGATCTAAACAAAGAGGTGCTGAATATGCCTGCGGAAAAACGGCAAGGG CCAGACAAAGAGAAGTTTGACAAATTAAGGAGTTCGAGGTTGCTCATCAATTCGTCGTTGATGAAGATCGACGATGCCATTATGCTCTTCCATGACTTCT AA
AA sequence Show only first row Show all	>Lus10012787 pacid=23142356 polypeptide=Lus10012787 locus=Lus10012787.g ID=Lus10012787.BGIv1.0 annot-version=v1.0 MIPKHGIMYAVHLITNHFGDLVAKVCECLLRNGPLPLHAIARRTDLSHTKVKNSLLVLIQHNCVQAFSLDEAEDGGKIYLQYIALLANILHRARFSKFMD VVSKELGGPCGEILKGLLEHGRLTVKQILDRAGKNVKESTKTVCLGLNPVQENLHKLVMSHYVESCPASEPAVLPQADDPAAKRRAAKSDKIIVETVTLE QRVMSAAMPSEVKRFFFAPNTDKIADNEQKMDQSPSKDAGKKRKLGDMESDTAVAEEDEFMWRANFEELARRLRHKVCIDTAKARLDDEAAIVLSAMIEG SRTKEKKVKTASSVPLSLNSIYEEVMKNEKNHNMTFDHVRTCLHQMRSSPAFVKGADEYSIDFAQIIEAAQSEEVETLILKRYGRDAYTMFRLLSRAGCL MESDKIADTVFVDKKGATKTLYRMWEDGYLIMQKLVLGGSAGASGYGGSTFLLWKVNKKNLLETVLDEMFHAALNLNLRAAHELDLNKEVLNMPAEKRQG PDKEKFDKLRSSRLLINSSLMKIDDAIMLFHDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49000			RNA polymerase III subunit RPC...		Lus10012787 [exp]	0	1
AT2G34670			Protein of unknown function (D...		Lus10036155 [exp]	6.3	0.8090
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	6.7	0.8057
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	10.1	0.8116
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10026342 [exp]	15.2	0.7382
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	18.3	0.7913
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	25.2	0.7641
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	27.3	0.7645
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10028630 [exp]	28.0	0.7879
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10013138 [exp]	28.1	0.7331
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10018928 [exp]	30.9	0.7534

Compare expression of checked genes

Lus10012787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.