Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15560 1229 / 0 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 1014 / 0 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 741 / 0 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT5G50850 58 / 9e-09 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G30120 43 / 0.0008 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033987 [exp] 1365 / 0 AT4G15560 1134 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012724 [exp] 1030 / 0 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 1028 / 0 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019991 [exp] 1026 / 0 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 1021 / 0 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 1013 / 0 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 1012 / 0 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10013117 [exp] 759 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Lus10008084 [exp] 753 / 0 AT5G11380 960 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G015200 [exp] 1311 / 0 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 1292 / 0 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.007G058500 [exp] 1033 / 0 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G171700 [exp] 1031 / 0 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G249700 [exp] 795 / 0 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 773 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.001G061400 [exp] 59 / 8e-09 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 56 / 6e-08 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.004G129800 [exp] 45 / 0.0001 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.017G076500 [exp] 44 / 0.0002 AT2G34590 671 / 0.0 Transketolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012789 pacid=23142363 polypeptide=Lus10012789 locus=Lus10012789.g ID=Lus10012789.BGIv1.0 annot-version=v1.0 ATGGCGCTCTGTGCATTCTCATTTCCTGCTCATGCCAAAAGACTGGTAGATCCTCTTCCAAAGTTCTATTCTTTACCATCTCAGGGAACAGATCTGGTCT CCCAATTCCCCCACAAGCTCAGCCAGACACATGCAAGGAGAAAGGGTAACGGTGGAGTTTATGCTTCATTATCAGAAAGAGGAGAGTATCATTCTCAGAG GCCACCAACGCCTCTTCTTGACACCATTAATTATCCAATTCACATGAAGAATCTTTCTCTCAAGGAGCTGAAACAACTAGCAGATGAGTTGAGGTCGGAT GTGATCTTCAATGTCTCCAAAACTGGAGGTCACTTAGGCTCCAGCCTTGGTGTTGTGGAGCTCACTGTGGCTCTTCACTATGTATTCAATTGTCCTCAGG ACAAGATTCTTTGGGATGTTGGCCATCAGTCCTACCCTCATAAAATCCTGACCGGGAGAAGAGACAAGATGCACACTATCAGACAGACAAATGGATTGGC TGGATTTACAAAGCGGTCGGAGAGCGAATATGATTGCTTTGGAACCGGTCACAGCTCGACAACTATTTCTGCTGGCTTGGGAATGGCTGTGGGGAGAGAT CTAAAGGAAAGAAAGAACAATGTAGTTGCCGTCATTGGCGATGGAGCAATGACTGCTGGACAGGCTTACGAAGCTATGAACAATGCCGGTTACCTTGATT CTGACATGATTGTAATTCTCAATGACAACAAACAAGTTTCCTTACCAACTGCTAATCTTGATGGGCCAATACCACCCGTTGGAGCTCTAAGTAGTGCGCT CAGCAGGCTGCAATCGAACCGGCCGCTCAGAGAACTCAGAGAAGTTGCTAAGGGAGTCACGAAACAAATTGGTGGACCGATGCATGAATTGGCAGCTAAG GTTGATGAGTATGCTCGTGGAATGATAAGTGGTTCAGGATCAACCCTGTTTGAGGAGCTTGGCCTTTATTATATTGGTCCAGTTGATGGCCACAGTATAG ATGACATTGTGGCCATTCTCAAAGAGGTTAAAAGTACCAAAGCTACCGGTCCAGTATTGATCCATGTTGTGACTGAGAAAGGCAGAGGATATCCATATGC TGAAAAGGCTGCTGACAAGTACCATGGAGTGGCCAAGTTTGATCCTGCGACCGGACAGCAATTCAAGTCCAGCGCTCCTACTCAATCTTACACTACATAT TTTGCGGAAGCTTTGATTGCTGAAGCAGAAGCGGACAAAGATGTTGTAGCAATCCATGCTGCAATGGGAGGCGGAACAGGCTTAAATCAGTTTCTTCGCC GGTTCCCAACAAGGTGCTTTGATGTCGGGATTGCAGAACAGCATGCTGTGACATTTGCTGCAGGGCTTGCTTGTGAAGGACTTAAACCATTTTGTGCAAT ATATTCATCTTTCCTGCAAAGGGCTTATGACCAGGTAGTCCATGATGTTGATCTTCAAAAGCTACCTGTAAGGTTTGCCATGGACCGGGCAGGGCTAGTT GGAGCTGATGGACCAACACATTGTGGAGCTTTCGATGTAACGTTCATGGCTTGTCTTCCTAACATGGTGGTGATGGCCCCTTCAGATGAGGCAGAGCTTT TTCACATGGTTGCTACTGCTGCTGCCATTGATGATCGTCCTAGCTGTTTCCGGTATCCAAGAGGTAACGGTTTGGGCGTTGAGTTGCCACCTGGAAATAA AGGAGTCCCTCTTGAGGTTGGTCAAGGAAGGATCCTGATAGAAGGTGAAAGAGTGGCACTGTTAGGATATGGAGCGGCAGTCCAAAGTTGTTTGGCTGCT GCATCTTTAGTTGAACCTCATGGTCTCAAGGTAACAGTTGCAGATGCTCGATTCTGCAAGCCGTTAGATCAGGCATTGATCAGGAGCTTGGCGAAAACCC ACGAGGTTCTGATCACGGTCGAAGAAGGATCAATTGGTGGGTTTGGTTCCCATGTTGTACAGTTCCTAGCACTGGATGGACTTCTCGATGGCAATCTTAA GTGGCGGCCACTGGTTCTTCCTGACCGGTATATCGACCATGGATCACCAGCAGACCAAATGTTGGAAGCTGGACTTACACCATCACACATTGCAGCAACT GTATTCAACATACTTGGACAAAAGAGGGAAGCTTTGCAGATTATGTCATGA
AA sequence Show only first row Show all	>Lus10012789 pacid=23142363 polypeptide=Lus10012789 locus=Lus10012789.g ID=Lus10012789.BGIv1.0 annot-version=v1.0 MALCAFSFPAHAKRLVDPLPKFYSLPSQGTDLVSQFPHKLSQTHARRKGNGGVYASLSERGEYHSQRPPTPLLDTINYPIHMKNLSLKELKQLADELRSD VIFNVSKTGGHLGSSLGVVELTVALHYVFNCPQDKILWDVGHQSYPHKILTGRRDKMHTIRQTNGLAGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRD LKERKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTANLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK VDEYARGMISGSGSTLFEELGLYYIGPVDGHSIDDIVAILKEVKSTKATGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGQQFKSSAPTQSYTTY FAEALIAEAEADKDVVAIHAAMGGGTGLNQFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVVHDVDLQKLPVRFAMDRAGLV GADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGLGVELPPGNKGVPLEVGQGRILIEGERVALLGYGAAVQSCLAA ASLVEPHGLKVTVADARFCKPLDQALIRSLAKTHEVLITVEEGSIGGFGSHVVQFLALDGLLDGNLKWRPLVLPDRYIDHGSPADQMLEAGLTPSHIAAT VFNILGQKREALQIMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012789 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10033987 [exp]	4.5	0.8670
AT1G63430			Leucine-rich repeat protein ki...		Lus10008310 [exp]	9.8	0.8155
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	11.0	0.8160
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	14.4	0.8690
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10017673 [exp]	18.7	0.8494
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	22.6	0.8661
AT1G64150			Uncharacterized protein family...		Lus10024713 [exp]	24.6	0.8652
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10011062 [exp]	26.7	0.7410
AT3G27690		LHCB2.3, LHCB2:...	LIGHT-HARVESTING CHLOROPHYLL B...		Lus10001169 [exp]	32.6	0.8404
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10008718 [exp]	33.4	0.8473

Compare expression of checked genes

Lus10012789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.