Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21480 89 / 4e-19 BRCT domain-containing DNA repair protein (.1) AT4G03130 70 / 1e-12 BRCT domain-containing DNA repair protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033984 [exp] 216 / 1e-62 AT3G21480 301 / 3e-86 BRCT domain-containing DNA repair protein (.1) Lus10037907 [exp] 151 / 4e-40 AT3G21480 323 / 3e-94 BRCT domain-containing DNA repair protein (.1) Lus10038633 [exp] 144 / 1e-37 AT3G21480 317 / 5e-92 BRCT domain-containing DNA repair protein (.1) Lus10033986 [exp] 0 / 1 ND 44 / 7e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014700 [exp] 111 / 1e-26 AT3G21480 366 / 4e-109 BRCT domain-containing DNA repair protein (.1) Potri.014G135520 [exp] 79 / 1e-15 AT4G03130 284 / 2e-83 BRCT domain-containing DNA repair protein (.1) Potri.010G015300 [exp] 0 / 1 AT3G21490 89 / 2e-23 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012790 pacid=23142372 polypeptide=Lus10012790 locus=Lus10012790.g ID=Lus10012790.BGIv1.0 annot-version=v1.0 ATGCCAGATAAGTTGAGGAAGGGAGTAATCGAACCATTCATTTCTACTTCACCAGTTGGATATGTGACTCCTGCAAATGCTGCTTCCCCCATTTGTACGG CCAATGGATTGTCCAAGAACAAGAACCTGGCTACAACTTCTCGAAAGAGGAAAATTCATAGCTTATGCACCATTGAACCGGAACCTGTTACCGAAATGAA AGATCCAAGAAAGAGGAGGGATTTGAAAGATCTTCGAGTCCTTTTTAGCCATCACTTGGATGAAGATGTTATTAAGCGCCAGAAAAAGACTGCATCCTCT GTTACGAATGCAACACACTTCGTTACAGATAGGTTTGTGCTCACAAGGAACATGTTGGAAGCCATTGCTTCGGGAAAACCCATGGTGACACCTTTGTGGC TTGAGCACCCGATTGAGAAAGTTGGTAGATCTGCTTTGAAGGATGAAACACTCACCCAAGAACTTCTGGTCTTATCTAGCGAGGAAGATTACGAAATCTA TGTTCCTTTCCTCAAAAGAGTTACCAAATCAACTATTTGGAGAAATCATTCAGGAGTCAAATTTCCCATAAAAGTAAATCCAGGAAGCAGAGAAAACAGC AGGAGATCAAGAGGATCCAAAAGAAGAAGAAGAGGAGGAGGTAGTGGTGGTGGAATACAGAGTCCCCATGCACTGCAATGCCTGCGAGCGACGCGTCGCC AAAACCATTTCCAAATTCAAAGAGTGCAGCAATTCATGACACAGAAGCACAAGCACAAGGTGGTGGTGACGGGGCAGATTGATCCGTTGAAGCTTCTGAA AAAACTGAGGACGAAGCCCAGGAAGAACAAGTTCGTTGAGATTGTGGAGGCTGCTGCTGCAAATGAGAACAAGAAAGACGGCGAAGAAGCGGCGATGGCG GCTGGATGTGATGATAGTGAGCAGAGGAGGGTCACGAGTGGCGTAGTAGGAGTTGGTGGTCCGTTTCCACCGTCGGCGTCTATGGCCGGATGGGTTCCGT ATCATCAATATTATTGTAACCATGGATGGCCGCCATGGCGTCGAGAGTTTTATTATAAAGATAATGATGTTATCTTTACGCTTGTTCTCTTATGTAGCCA TTAA
AA sequence Show only first row Show all	>Lus10012790 pacid=23142372 polypeptide=Lus10012790 locus=Lus10012790.g ID=Lus10012790.BGIv1.0 annot-version=v1.0 MPDKLRKGVIEPFISTSPVGYVTPANAASPICTANGLSKNKNLATTSRKRKIHSLCTIEPEPVTEMKDPRKRRDLKDLRVLFSHHLDEDVIKRQKKTASS VTNATHFVTDRFVLTRNMLEAIASGKPMVTPLWLEHPIEKVGRSALKDETLTQELLVLSSEEDYEIYVPFLKRVTKSTIWRNHSGVKFPIKVNPGSRENS RRSRGSKRRRRGGGSGGGIQSPHALQCLRATRRQNHFQIQRVQQFMTQKHKHKVVVTGQIDPLKLLKKLRTKPRKNKFVEIVEAAAANENKKDGEEAAMA AGCDDSEQRRVTSGVVGVGGPFPPSASMAGWVPYHQYYCNHGWPPWRREFYYKDNDVIFTLVLLCSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21480			BRCT domain-containing DNA rep...		Lus10012790 [exp]	0	1
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	13.2	0.7849
					Lus10024539 [exp]	15.7	0.7679
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	19.5	0.7779
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	23.8	0.7522
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Lus10001047 [exp]	25.0	0.7353
AT4G12680			unknown protein		Lus10025177 [exp]	25.6	0.6769
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	25.9	0.7463
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10028572 [exp]	26.9	0.7520
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018034 [exp]	30.5	0.6708
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	31.0	0.7469

Compare expression of checked genes

Lus10012790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.