Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06330 344 / 5e-115 RING/U-box superfamily protein (.1.2.3) AT5G18760 259 / 3e-82 RING/U-box superfamily protein (.1) AT5G60580 199 / 2e-58 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 173 / 8e-49 RING/U-box superfamily protein (.1.2) AT3G09760 173 / 1e-48 RING/U-box superfamily protein (.1) AT2G37950 65 / 5e-12 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 58 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G38070 57 / 7e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 56 / 9e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G01070 55 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033985 [exp] 752 / 0 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 431 / 6e-149 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10037906 [exp] 329 / 1e-108 AT3G06330 232 / 1e-71 RING/U-box superfamily protein (.1.2.3) Lus10037410 [exp] 200 / 2e-58 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 197 / 8e-58 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10022585 [exp] 194 / 2e-56 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10026501 [exp] 194 / 9e-56 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10041301 [exp] 200 / 1e-55 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10012793 [exp] 182 / 1e-54 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014950 [exp] 444 / 3e-154 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 438 / 8e-152 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 406 / 2e-139 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.016G022900 [exp] 208 / 7e-62 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 206 / 4e-61 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.009G013300 [exp] 206 / 8e-61 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 193 / 5e-56 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.010G115600 [exp] 65 / 2e-11 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 63 / 8e-11 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.006G094000 [exp] 60 / 5e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10012791 pacid=23142326 polypeptide=Lus10012791 locus=Lus10012791.g ID=Lus10012791.BGIv1.0 annot-version=v1.0 ATGCATCATCATCCACCTCCATCTCAGCCGGTAGCCACCGATGGAACTGCAGATTCACAGGCTTCACCATCTTCTTCTTCTTCTTTGCAGGCTGATTTGG AAAATGGGACACCATCTAATGAAGGAATGACAAGGGCAGGAGGAGCGAGTATGAGGAAGAGTGATCTTTCTCTACAAATACCACCTAGACCAGTAGCTCC TTTTGGAGGTAGCCGCAGCAATGGCAAAGGATTGCTCAACTCTCAAACTTCATTCAAGGCTAGCCCTACATCATCATCTGCAGGCTTTCTGCGGGCACTA AGCTTCAAGAAGAAGAGTGGTGCACTTGAAGGTGAAAGGAGCTCCCTGCTCAACTCCTCAGACACCTCATCACATCCTCCACTAAGTCCTATCATAGCCA ATCTCAAGTCTGCATTTTCCAGATGTACTTCACTTCCACACCCATCAGCTTTTTCTCCCACAGTCTCGGTCCCCACGCCTGTTTCAGCTCGATTGCCTGG GGAAATTCGGCACTTTCAGAAACCAGTAGTTTCAAGGTCTCTTTCCGTCCCAGGGCGAAATATTGTGATTGTTCGGTCTGCATCTTTTGCTACGCCCAGA TTTCAAACGAGTGGAAGTTCTTCTGATGCTCAAATAAGTACAGATCCCAACGAAGGTGACGACGATGATGAACACATCCCAGAAGAGGAGGCAGTATGCA GGATCTGTCTCGATGCATGTGAAGAAGGAAACACACTCAAAATGGAATGCAGTTGCAAAGGAGACCTCAGACTTGTACATGAAGAATGTGCCATTAAGTG GTTTAGCACCAAAGGAAACAAGAACTGTGAAGTGTGCTGTCAAGAAGTCAAGAACTTGCCTGTGATCTTATTCCGAGTAACAAGCTCTGCCCAGTTTAAC GGCAGGCAGGCACCGAACGGCCAGAGCTTGAGGGCACAACAAATAAGTGCCTGGCAGGACTTTGTTGTTCTAGTACTGATTAGCACAATATGCTATTTCT TCTTCCTGGAGCAATTACTGATCCGGGACATGAAAACACAGGCGATAATAATCGCAGCTCCGTTTGCATTTGCGTTAGGCGTTATGGCATCGATATTCGC AGTCATCCTAGCGATCAGGGAATTCATATGGACATACGCTGCGCTGGAGTTTGCACTGGTAGCTGTAACGGTGCACCTTTTTTATTCCATACTTGATCTG GATGCGATATACGCAATACTACTAGCAGCAGTGTTTGGGTTTGCAGCAGCGATGAGTCTGAACTCATTGTACATACAGTACTTCATATGGAGAGCTCAGG CTGCTCAAAACTCTAATGGCTTCAATGCTCCCCCAGTCTGA
AA sequence Show only first row Show all	>Lus10012791 pacid=23142326 polypeptide=Lus10012791 locus=Lus10012791.g ID=Lus10012791.BGIv1.0 annot-version=v1.0 MHHHPPPSQPVATDGTADSQASPSSSSSLQADLENGTPSNEGMTRAGGASMRKSDLSLQIPPRPVAPFGGSRSNGKGLLNSQTSFKASPTSSSAGFLRAL SFKKKSGALEGERSSLLNSSDTSSHPPLSPIIANLKSAFSRCTSLPHPSAFSPTVSVPTPVSARLPGEIRHFQKPVVSRSLSVPGRNIVIVRSASFATPR FQTSGSSSDAQISTDPNEGDDDDEHIPEEEAVCRICLDACEEGNTLKMECSCKGDLRLVHEECAIKWFSTKGNKNCEVCCQEVKNLPVILFRVTSSAQFN GRQAPNGQSLRAQQISAWQDFVVLVLISTICYFFFLEQLLIRDMKTQAIIIAAPFAFALGVMASIFAVILAIREFIWTYAALEFALVAVTVHLFYSILDL DAIYAILLAAVFGFAAAMSLNSLYIQYFIWRAQAAQNSNGFNAPPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06330			RING/U-box superfamily protein...		Lus10012791 [exp]	0	1
AT3G56590			hydroxyproline-rich glycoprote...		Lus10001613 [exp]	4.1	0.8324
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	5.7	0.7894
AT1G10790			unknown protein		Lus10022968 [exp]	8.5	0.8259
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	11.4	0.7948
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004550 [exp]	16.8	0.7743
AT2G35880			TPX2 (targeting protein for Xk...		Lus10029355 [exp]	17.7	0.7557
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10015274 [exp]	19.0	0.7755
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	23.4	0.7683
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	25.3	0.7508
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	32.0	0.7290

Compare expression of checked genes

Lus10012791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.