Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033985 [exp] 227 / 2e-70 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G196400 [exp] 43 / 4e-05 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012792 pacid=23142331 polypeptide=Lus10012792 locus=Lus10012792.g ID=Lus10012792.BGIv1.0 annot-version=v1.0 ATGCAAGGCTCTGATTATTATGATCTAGAAGCAGCGGTACCACCACCGTCCCACACCATTAATAACCACCATGGTGGTGCTGCTGCTGATGTACAGGTTG ATCTGGAAAATGGCTGGCCGATGTCGGACGTGAAAGTTTCTGGGCGAGCGAGCAAAAGCTCTCACCTTTCGATCGAAATCCCCATCGGTCCAGCCCCCTG TTTCACCAAGAGCTGTCATGGGAAAGGCATACTCCACTGTCACAGCTTGCGGTTCAAGATCAACAGCTCCATATTAGATGACGGTCGGAGAAGCTTTTGT CTCAGTTCAGCAGCTCAGGAAATTAGTCGCACCAAATCAATACTACCAACGTCAACACTCTTCTGGCGACAATGCACCTCGCTTCCCACCACACCCATTT CCTCTTACGTCTCACTGAAGTCACTCACATCCCAGAAACAACAACAGCAAGTCGTAGATCTTTGTCAAGGTCGGTGA
AA sequence Show only first row Show all	>Lus10012792 pacid=23142331 polypeptide=Lus10012792 locus=Lus10012792.g ID=Lus10012792.BGIv1.0 annot-version=v1.0 MQGSDYYDLEAAVPPPSHTINNHHGGAAADVQVDLENGWPMSDVKVSGRASKSSHLSIEIPIGPAPCFTKSCHGKGILHCHSLRFKINSSILDDGRRSFC LSSAAQEISRTKSILPTSTLFWRQCTSLPTTPISSYVSLKSLTSQKQQQQVVDLCQGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012792 [exp]	0	1
AT3G06330			RING/U-box superfamily protein...		Lus10012793 [exp]	4.1	0.7697
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	5.3	0.8097
AT1G76070			unknown protein		Lus10021840 [exp]	11.0	0.8059
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	12.0	0.8068
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10030952 [exp]	13.4	0.7482
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	15.5	0.7965
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10016096 [exp]	24.2	0.7927
AT1G48300			unknown protein		Lus10009975 [exp]	26.9	0.7624
AT4G38830		CRK26	cysteine-rich RLK (RECEPTOR-li...		Lus10002371 [exp]	29.8	0.7913
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	30.1	0.7946

Compare expression of checked genes

Lus10012792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.