Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06330 191 / 1e-60 RING/U-box superfamily protein (.1.2.3) AT5G18760 186 / 1e-56 RING/U-box superfamily protein (.1) AT5G60580 147 / 2e-41 RING/U-box superfamily protein (.1.2.3.4) AT3G09760 137 / 2e-37 RING/U-box superfamily protein (.1) AT5G03180 130 / 4e-35 RING/U-box superfamily protein (.1.2) AT5G01070 59 / 2e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G05830 55 / 4e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 53 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 53 / 3e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G08750 51 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033985 [exp] 436 / 3e-149 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10012791 [exp] 218 / 1e-68 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 209 / 3e-65 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10021482 [exp] 143 / 1e-39 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10026501 [exp] 143 / 2e-39 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10022585 [exp] 141 / 5e-39 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 141 / 4e-38 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10037410 [exp] 139 / 4e-38 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10037906 [exp] 138 / 4e-38 AT3G06330 232 / 1e-71 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014950 [exp] 211 / 3e-66 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 211 / 3e-66 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 208 / 5e-65 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.016G022900 [exp] 150 / 3e-42 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 146 / 5e-41 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.009G013300 [exp] 143 / 1e-39 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 142 / 2e-39 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.006G094000 [exp] 58 / 4e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 57 / 5e-10 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 56 / 2e-09 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10012793 pacid=23142323 polypeptide=Lus10012793 locus=Lus10012793.g ID=Lus10012793.BGIv1.0 annot-version=v1.0 ATGCCAATTTTCTTCCACGCAAACAAAACAGACCCAGAAGTCCCGTCAATCGTGATCCATAACGGCACGGAAGAAAGAGTACCTGAAGAAGACGAGGAGG AGGGAATATGCAGGATCTGTCTCGACACAATCAGAGAAGGGGAGAAGATGAAACTGGCATGCGGTTGCAAAGGCGATCTCAGGCTGGTGCACGAAGAGTG TGCAGTAAGTTGGTTCAGCACCAAAGGGAACAAAGTCTGCGAGATTTGCGATCTGGAGGTTACGAACTTGCCTGTCATCGTGTTCAGGGAAGACAGCTTG ATTAAGACCGACGATGGCGACGACGAGCTAGATACCCAGAGCTGGGAGGCGAATGACGAAAGAAGTTCGGTGCAGGAATTTTTGCTGCTAGTTCTGATGA GCACAGTGGCCTACTTCTTCGTGCTGGAACTCCTACTGGTTCAGGAGAAGACATCTAAAGGACTAGCAATTGCAGCACCATTTGCGTTTGGACTGGGGAT TCTGGCATCAATGTTCGCACTCATGCTAGGGCTGAAAGAGCATGTATGGAGATATGCAATACTAGAGTTTGCACTCATCTCCGTCGCAATTCACCTAGCT TACATGATGCTAAGCGTGGAGCCAGTATACTCCATAATCCTTGGATCTGTCATAGGAATGGTGTTGGCCATGAGCACCACCGCGTTGTATCGGCATTACA GCTCTCCATCTACTACTTACAACTAG
AA sequence Show only first row Show all	>Lus10012793 pacid=23142323 polypeptide=Lus10012793 locus=Lus10012793.g ID=Lus10012793.BGIv1.0 annot-version=v1.0 MPIFFHANKTDPEVPSIVIHNGTEERVPEEDEEEGICRICLDTIREGEKMKLACGCKGDLRLVHEECAVSWFSTKGNKVCEICDLEVTNLPVIVFREDSL IKTDDGDDELDTQSWEANDERSSVQEFLLLVLMSTVAYFFVLELLLVQEKTSKGLAIAAPFAFGLGILASMFALMLGLKEHVWRYAILEFALISVAIHLA YMMLSVEPVYSIILGSVIGMVLAMSTTALYRHYSSPSTTYN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06330			RING/U-box superfamily protein...		Lus10012793 [exp]	0	1
					Lus10012792 [exp]	4.1	0.7697
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10030952 [exp]	6.3	0.6975
AT2G46490			unknown protein		Lus10040009 [exp]	12.1	0.6777
AT1G18760			Zinc finger, C3HC4 type (RING ...		Lus10020558 [exp]	14.5	0.6568
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10012109 [exp]	18.3	0.6958
AT4G20880			ethylene-responsive nuclear pr...		Lus10038459 [exp]	27.8	0.6801
AT1G66420	GeBP		DNA-binding storekeeper protei...		Lus10017793 [exp]	34.4	0.6931
AT5G28910			unknown protein		Lus10008196 [exp]	44.5	0.6429
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	62.5	0.6461
AT1G79660			unknown protein		Lus10041631 [exp]	72.6	0.6323

Compare expression of checked genes

Lus10012793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.