Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033984 [exp] 488 / 3e-166 AT3G21480 301 / 3e-86 BRCT domain-containing DNA repair protein (.1) Lus10037907 [exp] 227 / 1e-67 AT3G21480 323 / 3e-94 BRCT domain-containing DNA repair protein (.1) Lus10038633 [exp] 215 / 2e-63 AT3G21480 317 / 5e-92 BRCT domain-containing DNA repair protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014700 [exp] 132 / 3e-34 AT3G21480 366 / 4e-109 BRCT domain-containing DNA repair protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012794 pacid=23142330 polypeptide=Lus10012794 locus=Lus10012794.g ID=Lus10012794.BGIv1.0 annot-version=v1.0 ATGGTTTCCATTGGAGATGACGGCGGCGGTGTGGTTCGACCACTGGAAGGCGAATCAGCTCCCGATTCTGCTGCGGGGATATCTCATCCTCTGAATTCGA AATGCTTTCCGCTATACTCGCCAGGTGGGAGAGATGGCTACGAAGTTGATGACTATATGGAGACAAATACGGTTCTGTATGATGATATAATTCCGGTTGA AGATGCTGTGGAGACCCAAGTCATGAACTATGGGAATGAAACACAAATACTAGATGATCCAGACGTCTCAGGAAGTATGGATACCCAGGTGATCGATGAG TTCAGTGATCGAGACTCCATTGATAGTGATGGTGAAGCAAGTGACACAACTGAAGTTTTGGGTGGTGGTGATGAGCTCTCTGATGATGAGTCAAGGAGGG GAGGTAAGGTTCAGTGCCTTTCTTATGATGATTGTGAAGAGAAGCAGTTTGTGGATCAATCAACTGCTTTGTCTTACCAAAAGTCCAGCTCAGCTCATAG AAATTCCCCGAAGCATTCTGGAAACGGTTCTTGTCCGGTGCTGAACATTAGTCATTCACCAGAGCAGTCAGCTTCGGGGAGTAACATTTTAAAAACAATT GGCTGTGATAAAATGATTAGTGAATCTGATACAGGAGGAAAAAATGGAAAAGAGAAGGAACCGGATAATGGAATCAAGTCTAAGGCTAATTCTTCTGCTG GGAGAGTGCTGTTCAATGTTGGTTTCGCTGTTGAAGATGGTGGTCTGTACTGTACTGGCAGCATCACTGAAATAAAAGAAATCACCAAGTCACCTACTAA TGAGGAGGAGTTGGCAGGGTTAAGTTATGTGGACTCACAGGAACCTGGTGAAGGCATCACAAGCTAA
AA sequence Show only first row Show all	>Lus10012794 pacid=23142330 polypeptide=Lus10012794 locus=Lus10012794.g ID=Lus10012794.BGIv1.0 annot-version=v1.0 MVSIGDDGGGVVRPLEGESAPDSAAGISHPLNSKCFPLYSPGGRDGYEVDDYMETNTVLYDDIIPVEDAVETQVMNYGNETQILDDPDVSGSMDTQVIDE FSDRDSIDSDGEASDTTEVLGGGDELSDDESRRGGKVQCLSYDDCEEKQFVDQSTALSYQKSSSAHRNSPKHSGNGSCPVLNISHSPEQSASGSNILKTI GCDKMISESDTGGKNGKEKEPDNGIKSKANSSAGRVLFNVGFAVEDGGLYCTGSITEIKEITKSPTNEEELAGLSYVDSQEPGEGITS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012794 [exp]	0	1
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	7.6	0.8998
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	7.6	0.8996
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	9.0	0.8946
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	9.0	0.8783
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	11.5	0.8917
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	18.3	0.8790
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10029994 [exp]	19.3	0.8614
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	22.6	0.8844
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10028602 [exp]	22.8	0.8324
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	23.0	0.8512

Compare expression of checked genes

Lus10012794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.