Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06340 306 / 1e-92 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G18750 283 / 1e-82 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 201 / 8e-55 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G27240 184 / 1e-47 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04980 163 / 4e-41 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 162 / 4e-41 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 145 / 4e-37 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT4G19570 138 / 4e-34 Chaperone DnaJ-domain superfamily protein (.1) AT4G19580 130 / 3e-33 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 127 / 6e-30 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033983 [exp] 979 / 0 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 305 / 3e-89 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 286 / 1e-82 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 209 / 4e-56 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 182 / 7e-48 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 179 / 7e-47 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 177 / 2e-45 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 167 / 3e-43 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 166 / 1e-42 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G018800 [exp] 416 / 5e-131 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 322 / 5e-103 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.005G043200 [exp] 325 / 8e-96 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 322 / 9e-95 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 202 / 1e-54 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 184 / 8e-49 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 182 / 8e-48 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 177 / 2e-46 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 171 / 5e-44 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 168 / 4e-43 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10012795 pacid=23142375 polypeptide=Lus10012795 locus=Lus10012795.g ID=Lus10012795.BGIv1.0 annot-version=v1.0 ATGGAGTGCAATAAAGAAGAGGCTGTTAGGGCCAAAAGTTTGGCTGAGACTAAGATGCAAAACAAAGATTTTGCTGGGGCTCGCAAAATGGCAATCAAGG CTCAAAAACTCTATAATGAATTGGATAAGATCTCTCACATTTTGATTATATGCGATGTACATTGTGCGGCTGAGCTGAAAGTATCGGGAACTGAGATGGA CTGGTATGGTATCCTTCAAATTGAAAGGACAGCTGATGAGACTACTATCAAGAAGCAGTACAGGAAGTTTGCTCTCTTACTTCATCCTGACAAAAACAAC TTCCCTGGTGCAGAATCAGCCTTTAAGTTGATTGGAGAAGCACAAAGAGTGCTCTTAGATAAAGGAAAAAGGTCATTGCATGACATGAAACGTTCAGTGA GCAGGCCTGCACAGGGCTCAACCTACAGCTCAAATTCCGGGACTCAGAATGGTTTTAATGGCTGTGTTGGTGGGTCCAATTATCAACACCAAAGGCCGCA ACAGCCAGCAACTCAACCAGGGTCTGGTAATAGTCGCCGGACTTTCTGGACTGACTGTCCCTTTTGTCAATCAAGGTACCAGTATTATGTGGAAATCATT AATAGGTCTGTTGTGTGTCAGCATTGTAATAAACCTTTTATAGCACATGAAAAGAGTGCACAGGGGATGCCACCGGTTAAAAAATTCAGTCAGCCAGTGT TTCACCCTCGGAACGATGCCCCTCAAGGTGCTGTTAAAGTGGATGTTGGATCGCAGAGAAATGCAAGTAAAGGGCATTCGAAAGTAGAATCTGAAAAGAA ACAAGGTACTGTTAAAGTGGAAGTTGGATTGCAGGGAAATTCTACTAAAGGGCATTCGAAAGTGGAATCTCAAAAGAAACCTACTGATGGCATGGCTGCT CCTGTAAATTCAAGTCGAAAGAGAAGCCGGAAAAAAGATGATTTCATTGTAAGCTCAGATTCTGAAAGTAGCAGTAGCGACAAAGACGAAGAACCTATGA TGCCGGATGTTGGTGATTTGGGAAGTTATAAGGAGTGTCCAAGGAGGTCTGTTAGGAGTAAACAGAAGGTTTCTTACCAAGAAAATAAAAGTGACGATGA AGAATCGAGGACCCCCCAGAAAAAAGCTAAGGAGAATGGGTCTACTGCGGAGAGCATGCAGTCGTCTGTGGATGCTGTCGCTAGAGGCAATAATAAGTCG AATACAGAGGACTTGAATAAAGATGACGAAACCAGGAATGTGAAGGAAAAAGAGGAGATGAATAAGAATGGCAGTATGAGAAGCTGTGAGGATCAAAATG ATTCCGATTCTGATGCTGGCCAGGAAATGGAATCTGTGCCTTATATTTGTCCTGATCCTGAATTTAACGACTTCGACAAGAAACGTGATGTGAAGTTATT TCAAGCTGGAAACATTTGGGCTATTTACGATGATTTCAGTGGCATGCCCAGGTTTTATGCTCGAATCAATAGAGTGATTTCTGGCGGCTTGAAGTTCAGG ATAACTTGGCTGGAAGCAGATCCAAATTCTGATAATGAACAGGAATGGGTGTCTGCTGGTTTTCCTATCTCCTGTGGTGAAGAGAGAGACGGTGTACCGA AAGGATCTTTTGAGCTTGATCCAGCTTCTATTCCTGAAAAAATGGAAGAAATCGATGTTCCAAGAAATTTGGAAGGCCGGGATGGTGATAGGAATTCCAA GGACGTGCATTCTGAATTTCCTTGTGAAGTGGAGCCTGAAGTTGCAAGCGCTCATGATCCCCACGCCAAGTTTAATGGGACTCCTGCTGAATCCGATCAT CCTGAAACAGAACAAGTACTGGACCCTCCTGTGGAATCCGATGATCCTGAAACAGAACAAGTCCCGGACTCTCTTGCAGAATCCGATGATCCTGACACAG AACAAGTCCAGGACCCCGAGTACTTTGATTTTGACGGTGAGAAAGCAATAGAGAAGTTTGAAAAGGGTCAGATTTGGTCAGTGTACTGTGACGAGGATAG CTTGCCCAAGTACTATGCGCTGGTAACCAAGGTTGATAAGCTGATGATTAAGATCAAGTGGCTCCGATCGGCTCATCTACCTAGTGGTGTGATTAAGTGG GCTGATAAGAAGATGGTCACTACTTGTGGAAGATTCAAAGCTACCGGGGGCAGCAATGAATATGAATCTACTGGACCATTTTCGCATCTGGTAAATGCAG AATCTGTTGGAAGGAGCAAGGCAAAGAATGAGTATAACATAGTCCCCTCTGAAGGCGAGGTTTGGGCGATGTATAAGGACTGGACTCACACCTTGAGCCC ATCCGACTTGGATACTTGCGAATATGATGTAGTTCAAGTTCTTGAGCGAAATGAGCTGCAGATTAAAGTTTCGTATTTGGAGCGTGTTAAAGGTCACAAT TCAGTTTTCAGAGCTTTAGCTAACCAAGGATCATCAGGTACTGCAGTTAACATGTCTGAGTTGCTTCGATTCTCTCACCGAATCCCTGCTTTCCAGCTGA CAGAAGAGCATGGATGCTTGAGTGGGTTCTGGGAACTGGATTCAGCAGCATTGCCAGCTCGCTATTTTACATAG
AA sequence Show only first row Show all	>Lus10012795 pacid=23142375 polypeptide=Lus10012795 locus=Lus10012795.g ID=Lus10012795.BGIv1.0 annot-version=v1.0 MECNKEEAVRAKSLAETKMQNKDFAGARKMAIKAQKLYNELDKISHILIICDVHCAAELKVSGTEMDWYGILQIERTADETTIKKQYRKFALLLHPDKNN FPGAESAFKLIGEAQRVLLDKGKRSLHDMKRSVSRPAQGSTYSSNSGTQNGFNGCVGGSNYQHQRPQQPATQPGSGNSRRTFWTDCPFCQSRYQYYVEII NRSVVCQHCNKPFIAHEKSAQGMPPVKKFSQPVFHPRNDAPQGAVKVDVGSQRNASKGHSKVESEKKQGTVKVEVGLQGNSTKGHSKVESQKKPTDGMAA PVNSSRKRSRKKDDFIVSSDSESSSSDKDEEPMMPDVGDLGSYKECPRRSVRSKQKVSYQENKSDDEESRTPQKKAKENGSTAESMQSSVDAVARGNNKS NTEDLNKDDETRNVKEKEEMNKNGSMRSCEDQNDSDSDAGQEMESVPYICPDPEFNDFDKKRDVKLFQAGNIWAIYDDFSGMPRFYARINRVISGGLKFR ITWLEADPNSDNEQEWVSAGFPISCGEERDGVPKGSFELDPASIPEKMEEIDVPRNLEGRDGDRNSKDVHSEFPCEVEPEVASAHDPHAKFNGTPAESDH PETEQVLDPPVESDDPETEQVPDSLAESDDPDTEQVQDPEYFDFDGEKAIEKFEKGQIWSVYCDEDSLPKYYALVTKVDKLMIKIKWLRSAHLPSGVIKW ADKKMVTTCGRFKATGGSNEYESTGPFSHLVNAESVGRSKAKNEYNIVPSEGEVWAMYKDWTHTLSPSDLDTCEYDVVQVLERNELQIKVSYLERVKGHN SVFRALANQGSSGTAVNMSELLRFSHRIPAFQLTEEHGCLSGFWELDSAALPARYFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10012795 [exp]	0	1
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	6.8	0.9172
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10034066 [exp]	7.5	0.9091
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10033983 [exp]	8.4	0.8979
AT1G64260			MuDR family transposase (.1)		Lus10010073 [exp]	9.4	0.9032
AT1G77270			unknown protein		Lus10029729 [exp]	11.0	0.8987
AT1G18610			Galactose oxidase/kelch repeat...		Lus10017860 [exp]	11.5	0.8827
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034111 [exp]	12.9	0.9157
AT3G15120			P-loop containing nucleoside t...		Lus10013677 [exp]	13.2	0.8714
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	21.4	0.8997
AT1G10180			unknown protein		Lus10040609 [exp]	23.5	0.8814

Compare expression of checked genes

Lus10012795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.