Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36980 516 / 1e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14050 317 / 5e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 320 / 3e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 311 / 4e-97 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G21090 303 / 9e-96 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G20230 296 / 8e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 294 / 2e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 290 / 1e-89 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G17630 288 / 5e-89 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G02750 290 / 6e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033982 [exp] 816 / 0 AT2G36980 554 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028106 [exp] 323 / 6e-102 AT1G25360 916 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 311 / 3e-97 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034408 [exp] 298 / 5e-95 AT5G42450 538 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 297 / 6e-92 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030549 [exp] 296 / 8e-92 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018278 [exp] 290 / 2e-90 AT4G14050 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 285 / 8e-89 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 289 / 1e-88 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G020500 [exp] 636 / 0 AT2G36980 725 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 353 / 4e-113 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G321700 [exp] 306 / 7e-97 AT4G14050 808 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 309 / 2e-96 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G104700 [exp] 306 / 1e-95 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G213200 [exp] 300 / 1e-95 AT5G42450 545 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 306 / 4e-95 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 305 / 5e-95 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G085800 [exp] 301 / 4e-94 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 296 / 4e-93 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012796 pacid=23142371 polypeptide=Lus10012796 locus=Lus10012796.g ID=Lus10012796.BGIv1.0 annot-version=v1.0 ATGCACTCAAACTTATTCCATATCACCTCCAAGATCACTTCCCTCGCCCGTTCCGGTTTCCTCTCCCAAGCACGCAAACTGTTCGACGAAATGCCCAGCC GAGACACCATCGCTTGGAATTCGATGCTCACCAGCTACTCCCGCCTCGGTCTTCACCGGGAATCCCTTTCGCTCTTTCACCACCACATGAGGCTCACGAT TGATGTTGCCTGGAATATAATGATATCTGCGTTTGGCCAGTGTGGTGAAATTGAGTTTTGCTTGGATCTCTTAAGACAAATGCGCCAGAGTTTGTGCTTT CCTGATCAATTTACCTACAGCGCCGTTATAAATGCTTGTGCTGAATCTTTAGAGTCAGGTTATGGGTACATGATCCATGCTATTGTTACTAAAACCGGCT GGAGCTCTGCCATGGAGGTGAAGAATTCAATTCTAAGCCTCTATGCTAAACTAGGTTCTCTGGATGACACAGTGAAGGTGTTCCAATCATCCAGAATGCT AACTCAGGTGTCTTGGAATGCTATAATCGATGCTTACATGAAATCCGGAGACACAGAAAAAGCATTCTTTGCATTCCAGCAAATGCCTGAAAAGAATTTA GTCTCGTGGACGTCCATGATCTCAGGGTATGCACAGAAAGGTTGCGGCGAAGAAGCTTTGAATTTGTTCAGTTATATGATGATATCCGGTCTGCTTCCAG ATGATTTCACTCTAGGAGCGGCCCTTCACGCATGTTCCAGCATGGCATCGGTAGGCCATGGCAGGATGGTCCATGGATGCATAGTTCACTCCGGTTTCCA TACCTATGCTTATGTCGGCAATGGGCTAGTCGATATGTACGCAAAGTGTGGCGATTTAGATAGTTCAGTTACAGCATTCGATGATATTCACAACAAGGAT GTAGTTTCTCTCAACACTATGATATTCGCGCTGGGCTTACACGGGAAAGGAAACCGAGCTCTACAACTGTATGAAGATACGATAGAATCAGGGATGATAA AGCCAGATAAAGTGACTTTCGTTGGCTTGTTAATGACTTGTAGTCATAATGGCCTGGTCGAAAAAGGTCGAATGTTGTTCCAGACGATGAGTTCGGATCA CGGAGTTTCCCACGAGGTGGATCACGTAGCATGTATGGTGGATCTACTTGGCCGAGCTGGATATTTATCAGAAGCGGAAGAATTGGCTAGGAAATATAAG GAAGCAGTAGGGTTTAGTAATGAAGCTTTACTTGGAGCATGTTCCAGACACGGTGAAGTGGGAATGGGGAGTTGTTTAGGGGAGGAATTGAAGTTGTTGG AGCCTCGTAAAGAGACAAGCTACGTACTGCGATCCAATATGTATAGTGCAAGTGGGCGATGGGAAGAAGCTGAGTTGGTTAGGAAGGCTATGGTGGAGGA AGGGTTGAAGAAGCCGCCTGGTTGTAGTTGGATTGAAGTGAGGAATAAAGTTTCTTGTTTTGTTGCAGGAAGATGCAGCAGTAGTACTGTATATCATCCC TGTAAGGAAGAGATGCTAAACGTTCTACATTCTCTTGAATATGAGATGAGAAATTTATGTATTTGGTTGAAAGTGATTTAA
AA sequence Show only first row Show all	>Lus10012796 pacid=23142371 polypeptide=Lus10012796 locus=Lus10012796.g ID=Lus10012796.BGIv1.0 annot-version=v1.0 MHSNLFHITSKITSLARSGFLSQARKLFDEMPSRDTIAWNSMLTSYSRLGLHRESLSLFHHHMRLTIDVAWNIMISAFGQCGEIEFCLDLLRQMRQSLCF PDQFTYSAVINACAESLESGYGYMIHAIVTKTGWSSAMEVKNSILSLYAKLGSLDDTVKVFQSSRMLTQVSWNAIIDAYMKSGDTEKAFFAFQQMPEKNL VSWTSMISGYAQKGCGEEALNLFSYMMISGLLPDDFTLGAALHACSSMASVGHGRMVHGCIVHSGFHTYAYVGNGLVDMYAKCGDLDSSVTAFDDIHNKD VVSLNTMIFALGLHGKGNRALQLYEDTIESGMIKPDKVTFVGLLMTCSHNGLVEKGRMLFQTMSSDHGVSHEVDHVACMVDLLGRAGYLSEAEELARKYK EAVGFSNEALLGACSRHGEVGMGSCLGEELKLLEPRKETSYVLRSNMYSASGRWEEAELVRKAMVEEGLKKPPGCSWIEVRNKVSCFVAGRCSSSTVYHP CKEEMLNVLHSLEYEMRNLCIWLKVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36980			Tetratricopeptide repeat (TPR)...		Lus10012796 [exp]	0	1
AT1G10350			DNAJ heat shock family protein...		Lus10013280 [exp]	1.0	0.9061
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	5.7	0.8873
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	6.9	0.8827
AT1G27200			Domain of unknown function (DU...		Lus10030815 [exp]	7.5	0.8699
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	9.5	0.8487
AT5G60750			CAAX amino terminal protease f...		Lus10032326 [exp]	11.6	0.8464
AT5G10530			Concanavalin A-like lectin pro...		Lus10020446 [exp]	11.7	0.8196
AT5G67300	MYB	ATMYB44, AtMYBr...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10010260 [exp]	14.5	0.8533
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	14.7	0.8646
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	15.0	0.8471

Compare expression of checked genes

Lus10012796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.