Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06350 714 / 0 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033981 [exp] 971 / 0 AT3G06350 752 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10001725 [exp] 379 / 2e-125 AT3G06350 315 / 9e-100 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10004130 [exp] 350 / 2e-114 AT3G06350 398 / 3e-132 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10040908 [exp] 266 / 4e-83 AT3G06350 291 / 2e-92 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10005928 [exp] 158 / 1e-43 AT3G06350 180 / 9e-52 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G019000 [exp] 789 / 0 AT3G06350 736 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029800 [exp] 687 / 0 AT3G06350 630 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029900 [exp] 488 / 5e-169 AT3G06350 516 / 4e-179 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.005G043400 [exp] 474 / 2e-163 AT3G06350 508 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.014G135500 [exp] 427 / 3e-145 AT3G06350 444 / 8e-151 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.008G196100 [exp] 337 / 2e-113 AT3G06350 326 / 1e-108 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.017G103401 [exp] 67 / 5e-14 AT3G06350 59 / 2e-12 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF08501 [flax] [poplar] Shikimate_dh_N Shikimate dehydrogenase substrate binding domain CL0036 [flax] [poplar] TIM_barrel PF01487 [flax] [poplar] DHquinase_I Type I 3-dehydroquinase CL0063 [flax] [poplar] NADP_Rossmann PF01488 [flax] [poplar] Shikimate_DH Shikimate / quinate 5-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10012797 pacid=23142344 polypeptide=Lus10012797 locus=Lus10012797.g ID=Lus10012797.BGIv1.0 annot-version=v1.0 ATGGACTCCGGCAATGTCATGCTGACCTCAAGCTCTTCTGCAATGGGCGGCGGAACTGGACTTCCGCTCAACAATCCGACCTTAATCTGTGTTCCAATCA TGGCGGATTCCGTAGATGACATGCTCGTTAAAGCATCCCAGGCCAAGACCGCCGGTGCTGATCTCGTAGAAATTCGATTGGATAGCTTGACTAACTTCCT CCACCCTCGCCAGGATCTCACCACGCTCATTAATGGCTCTCCCTTGCCCACTCTCTGTACCTACAGGCCGAGGTGGGAAGGAGGCCAGTACGGGGGTGAT GAAAGCGAGCGTTTGGATGTTCTTAAGTTAGCCATGGAATTGGGAGCTGATTACATTGACGTTGAGCTTCAGGTTGCCGGTGATTTCATTGAATCCTTAC ATGGAAACAGACCTGCAAAGTGCAAAGTCATTGTTTCTTCTCATAACTATGAAAATACGCCATCCGTTGAGGACCTGGGTAACTTGGTGGCAAGAATACA ATCAACGGGAGCTGACATAGTGAAGATTGCTACAACAGCCTTGGATATTACTGACAACGCGAGAATGTTTCGAATAACAGTTCATTCTCAAGTTCCAATA ATAGGACTTGTTATGGGAGAGAGGGGTTTGATGTCAAGGGTGCTTTGTGGCAAATTTGGGGGATATCTCACCTTTGGAACTTTGGAGTCTGGAGTGGTCT CGGCTCCTGGGCAGCCGTTGATCAAAGACCTGCTGGATCTATACAATTTCAGACAAATCCAAGCTGATACCAAGGTTTTCGGCATAATAGGGAAGCCAGT TGGGCACAGCAAATCACCTGTTCTGTTCAATGAAGCATACAGATCACTTGGTTTTAATGGGGTATATGTGCACTTATTAGTTGATGACCTGGCAAGTTTT CTCAAGACTTACTCATCTCCGGATTTTGCAGGATTCAGTTGTACGATTCCTCACAAAGAGGTTGCTGTGAAGTGTTGCGATGAAGTTGATCCAGTTGCAA AGTCGATAGGAGCTGTTAATTGCATTGTAAGGAGAGAAAGTGATGGGAAGTTATTTGGTTTCAATACAGACTATGTTGGTGCAATTTCTGCAATTGACGA TGGACTTCAAGCTTCACGAAATGGTAGCAGTCAATCTGGTTCACCCTTAGCTGGTAAGGTGTTTGTGGTCATTGGCGCTGGAGGTGCTGGTAAAGCACTA GCTTATGGTGCAAAAGAAAAGGGAGCAAAGGTCATCATTGCCAATCGTACCTACGGTCGAGCGAAAGAGCTTGCTGACATAATTGGAGGAGAAGCCATCT CTCTAGCTGATCTAGAGAATTTCCATCCAGAAAGTGACATGATTCTTGCAAACACAACATCAATTGGAATGGAGCCAAAAATCGACGAAACACCCATCCC CAAGCATGCATTGAGACATTACGCCCTGGTATTCGATGCCGTTTACACCCCGAAAATTACGAGGATGCTGAGAGAAGCTGAGGAGTGTGGAGCCACGATC GTGTCGGGGCTGGAGATGTTCATTGGGCAAGCCTACCAGCAGTTTGAGAGGTTCACTGGATTACCAGCTCCCAAGGAACTTTTCCGCAAGACCATGTCCA AGTAA
AA sequence Show only first row Show all	>Lus10012797 pacid=23142344 polypeptide=Lus10012797 locus=Lus10012797.g ID=Lus10012797.BGIv1.0 annot-version=v1.0 MDSGNVMLTSSSSAMGGGTGLPLNNPTLICVPIMADSVDDMLVKASQAKTAGADLVEIRLDSLTNFLHPRQDLTTLINGSPLPTLCTYRPRWEGGQYGGD ESERLDVLKLAMELGADYIDVELQVAGDFIESLHGNRPAKCKVIVSSHNYENTPSVEDLGNLVARIQSTGADIVKIATTALDITDNARMFRITVHSQVPI IGLVMGERGLMSRVLCGKFGGYLTFGTLESGVVSAPGQPLIKDLLDLYNFRQIQADTKVFGIIGKPVGHSKSPVLFNEAYRSLGFNGVYVHLLVDDLASF LKTYSSPDFAGFSCTIPHKEVAVKCCDEVDPVAKSIGAVNCIVRRESDGKLFGFNTDYVGAISAIDDGLQASRNGSSQSGSPLAGKVFVVIGAGGAGKAL AYGAKEKGAKVIIANRTYGRAKELADIIGGEAISLADLENFHPESDMILANTTSIGMEPKIDETPIPKHALRHYALVFDAVYTPKITRMLREAEECGATI VSGLEMFIGQAYQQFERFTGLPAPKELFRKTMSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	0	1
AT1G31130			unknown protein		Lus10028643 [exp]	2.0	0.9545
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	2.6	0.9622
AT3G29185			Domain of unknown function (DU...		Lus10015378 [exp]	6.5	0.9153
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	7.3	0.9452
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	8.0	0.9178
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	8.7	0.9422
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	9.2	0.9175
AT2G26800			Aldolase superfamily protein (...		Lus10026823 [exp]	11.6	0.9189
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031758 [exp]	12.0	0.9169
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031326 [exp]	12.7	0.9412

Compare expression of checked genes

Lus10012797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.