Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18700 922 / 0 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) AT1G33940 194 / 4e-53 unknown protein AT2G45490 167 / 7e-46 ATAUR3 ataurora3 (.1) AT1G50240 172 / 3e-43 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT3G08720 164 / 6e-43 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G61960 163 / 7e-42 Protein kinase superfamily protein (.1.2) AT3G08730 160 / 1e-41 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT3G06030 159 / 4e-40 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G45160 161 / 5e-40 Protein kinase superfamily protein (.1.2) AT3G53930 156 / 4e-39 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033979 [exp] 733 / 0 AT5G18700 503 / 4e-162 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Lus10039167 [exp] 173 / 4e-44 AT1G50240 952 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10013766 [exp] 173 / 1e-43 AT1G50240 1521 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Lus10020580 [exp] 155 / 7e-42 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10005470 [exp] 164 / 5e-41 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 160 / 2e-40 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033518 [exp] 152 / 2e-40 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10005135 [exp] 158 / 9e-40 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025213 [exp] 154 / 3e-38 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G195800 [exp] 1094 / 0 AT5G18700 1833 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.010G031800 [exp] 1074 / 0 AT5G18700 1791 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1) Potri.019G052500 [exp] 172 / 3e-43 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2) Potri.006G080500 [exp] 158 / 9e-43 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.016G138400 [exp] 162 / 2e-42 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.002G263000 [exp] 165 / 4e-41 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G109600 [exp] 157 / 9e-41 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.002G181000 [exp] 161 / 1e-40 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G107000 [exp] 159 / 3e-40 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G129200 [exp] 155 / 3e-38 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012799 pacid=23142361 polypeptide=Lus10012799 locus=Lus10012799.g ID=Lus10012799.BGIv1.0 annot-version=v1.0 ATGAATCGGTTCCACGTCTATGAAGCTATTGGCCGCGGAAAATGCTCAACTGTGTATAAAGGGAGGAAGAAGAAGACCATCGAGTACTACGCGATTAAGA GCGTTGATAAGTCGCAGAAGAGGAAGGTTCTTCACGAAGTTAAGATTCTCCACTCTCTGGATCATCCAAACGTGTTGAAGTTTTACTCCTGGTACGAGAC ATCGGCTCATCTGTGGTTAGTTTTGGAGTATTGTGTTGGAGGAGACCTCAGGACATTATTACAGCAGGATGGTCAGCTGCCTGAAGAGTCAATTCTTGAT TTTGCAACTGACCTAGTGACAGCCTTGCAGTATTTACACTCGAAGGGAGTCCTCTATTGTGATTTAAAACCATCTAATATCCTTTTAGATGAAAATGGAC ACTTAAAGCTATGTGATTTTGGATTGGCAAACAAGTTGAGTGATATATCTAAAGCATACTCTACGTCAACAGAAGCAAAATGTGGAACGCCTTGTTATAT GGCTCCTGAACTGTTTGAGGATGCAGGAATTCATTCATATGCTTCTGATTTCTGGGCCCTTGGTTGTGTACTGTATGAGTGCTATACAGGGAGACCTCCT TTTGTGGGAAGAGAATTCACCCAGCTTGTGAACTCCATCGTCTCAGATCCAACTCCACCACTACCTGGCAATCCAAGCAGACCCTTTGCTAACTTGATCA ACTCTCTATTGGTCAAGGATCCCGTCGAACGAATTCAGTGGAATGAGCTCCTTGAACATGCGTTTTGGAGAAGCAAATTTCCTCTAGTATCATTACCGCC ACAACCTGCTTTTGATAAAATGATTGAGTATTCTGCTAGACCGTGCCTGTCAGAACGTAATGCAGACAAGTCTCTACAGAACAAAACCCCTACAAAAGGC CGTGAAAGAGATGCCAAAGTAACTCCAAGAAAAGATGAGAATTCGCAGTCAGGATTAAGGGGTATCGAGACCCCAGTCAAGGGAATACCTAGCAGCAAAA AAAATCAAGTGAAGGCCACCAGTAGACCTGTCGAGGAGAAGCAGAAAGATGCTGCTAACAGGCGCATTAATTTGTTAAGGTTATCAAGAATAGCAAAGTC AAATTTACATAGAGAGAATGACAAGGAAAACTACAGGAGACCCTTGCCCAATGGCACTGAGAACGATTCTGAGATTAAACTGGAGAACACGGATATGGAG CTGGATTTCAATGAGAACACTGAAGATGAGACGCAGGACGAACCTGATGGTACTGACACTGATAGTTCTACTGGTACGCCTGGAAACGTGGATAATAATG TTCAACAGATGGAGATATCTCCTGTAACCAATACCCCCTTCTTAGATGAGACAGGAACAAATGATTTAGAATCAGTATCAGATCATGTTGATACGGATGA CACTCCCACTGCCAGCCCACTCCCTAAACATCAGAAAGTTAATGCAGATATAGGGTCAGAGCCTGAGTTTGATTCCTTGAAATCATGTAAAAGTATCTCA GAAGTTATTTGGCATACTTCAGATCTTTCAGTGAGACCTGTGATGCCCAGCAGAAAAGCTTATAAGACATCAGGCGCTCCTCCACCTTCTCTACCCTTCG AGGCATTGCAGCCATCTGATTTGTTGAAAATGACCAAGGAGCAGCTTCATGCAGTTAATGCAAGAATAGTGTCAATACTGAATGGCAGCTCCAGCGTCGC AGAGAAGCAAAACGTAATTAGATATCTTGAGATGTTGAGCAGCAATGCCGACATAGCTAATATATTGACAAATGGACCTGTAATGCTCACACTTGTGAAA ATGCTTCGCTTGTCCAAGGCTTCAGCGTTGAGAGTGCATCTTGCTTCACTAATTGGCTTGTTGATACGTCATGCTACATTTATTGAAGATGATCTGGCAA ATTCTGGCATATTAAGTGCCCTTGCTGACAGCCTCCGGGACAGGCAGGAAAAAGTAAGGAGATTCTCTATGGCTGCTTTAGGTGAGTTGCTGTTTTACAT AGCCACCCAGAATGATCAATTTAAGGACAACAATCCATCAGAATCTCCTGCAAAAGACGGTAGATCAGTTCCTGGCTGGCAGGTTTCAAACTCGCTCATC TCAATGGTTTCCTCTGTGCTGCGGAGAGGAGAGGATGATATCACTCAAGTTTATGCCCTGAGAACAATTGAAAATGTATGCAGTCAAGGGGGGCAATGGG CTACACGATTCACTAGCCAAGATGGAAGAGATGACTTCCAAATTACGCTTCTTCAAGTTCTGGAGTCTGTTGCTGAGGAGTCCCAGCTGATTCTCGCAAA CCCTCAAATCTTCACCACAGCAATTCTCCCCAGCGTAGCAACTCTCTACAAGGGCAACAAAGACGATCATGCCAGATTCTTGTGCCTGAAGATTCTATTT CATGTGATGGTAATCTTCTTAAATGAACCATTCGAGGATGAGCAACGATCTGAAGCTTTGAAGTCCATAGCCAATGTTCATTTCCTACCACTCTACCCCA TACTGGTCGAAGATGAAGACCCTATTCCAATATTCTCTCAGAAGCTTCTTGTCATGCTCATTGACTTCAACTACATAAAAATTTCAGACATACTACATCT GAAGAAGACAGTTTCTCAGTGCTTTGAGTTCTTGCTTGGCGATCTATCCAGTGCAAATGTCAGCAACGTCAAGCTGTGTCTGGCCCTGGCATCTGCTCCT GAAATGGAGTCCAAGCTACTTTCCCAGCTCAAAGTAGTTCGCAGGATTGGCAATCTCCTGGAGTTCGTGTATGCAAAAGAGATGGAAGATTTCCTGGAAC CAACTCTTGGCCTCTGTAAGGCTTTCCTTCTCCGTTCATTTAGCAGGGAAAAAGGATTGAATTTCAGACAAGACCCATCACTCTTGACCGGAAGTTCGTC TGAAGCTGATGGCTGCGTGGAAGGAATAAGAAACGTTGCAGATTTCGGGAGCAACGTTGGTCTGTTGCTGCAACTCGGTGGTTCTTCGGAAGCAAATTTA TCAGAGATATCTTCTGAATGTGTAGTATTACTACTGAAGGCAGCTCCCAGGGAAGCCACCGCTAGTTTTCTAACTAACCTTCCAAAAGTCGGTGCCATAC TTGAGTCATGGCGCAGTGGCGCCCAGCACTTGGTTTTACTGCGCATGCTGCATGCCCTCTGCTACTCTTGTCGGCAGTACCGATCGCATTCGATGATTTT GTCCATTTCCATGGCTGAGATTTCAAAGCTGCAAGTGTTGGTCGTGGAGCTGAAAAGTTCAGCAGGAGCCGAGCTANNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTGTGATTTTTTCCTAAAAACCACCTCCATATTTC GTTTCGGTTAG
AA sequence Show only first row Show all	>Lus10012799 pacid=23142361 polypeptide=Lus10012799 locus=Lus10012799.g ID=Lus10012799.BGIv1.0 annot-version=v1.0 MNRFHVYEAIGRGKCSTVYKGRKKKTIEYYAIKSVDKSQKRKVLHEVKILHSLDHPNVLKFYSWYETSAHLWLVLEYCVGGDLRTLLQQDGQLPEESILD FATDLVTALQYLHSKGVLYCDLKPSNILLDENGHLKLCDFGLANKLSDISKAYSTSTEAKCGTPCYMAPELFEDAGIHSYASDFWALGCVLYECYTGRPP FVGREFTQLVNSIVSDPTPPLPGNPSRPFANLINSLLVKDPVERIQWNELLEHAFWRSKFPLVSLPPQPAFDKMIEYSARPCLSERNADKSLQNKTPTKG RERDAKVTPRKDENSQSGLRGIETPVKGIPSSKKNQVKATSRPVEEKQKDAANRRINLLRLSRIAKSNLHRENDKENYRRPLPNGTENDSEIKLENTDME LDFNENTEDETQDEPDGTDTDSSTGTPGNVDNNVQQMEISPVTNTPFLDETGTNDLESVSDHVDTDDTPTASPLPKHQKVNADIGSEPEFDSLKSCKSIS EVIWHTSDLSVRPVMPSRKAYKTSGAPPPSLPFEALQPSDLLKMTKEQLHAVNARIVSILNGSSSVAEKQNVIRYLEMLSSNADIANILTNGPVMLTLVK MLRLSKASALRVHLASLIGLLIRHATFIEDDLANSGILSALADSLRDRQEKVRRFSMAALGELLFYIATQNDQFKDNNPSESPAKDGRSVPGWQVSNSLI SMVSSVLRRGEDDITQVYALRTIENVCSQGGQWATRFTSQDGRDDFQITLLQVLESVAEESQLILANPQIFTTAILPSVATLYKGNKDDHARFLCLKILF HVMVIFLNEPFEDEQRSEALKSIANVHFLPLYPILVEDEDPIPIFSQKLLVMLIDFNYIKISDILHLKKTVSQCFEFLLGDLSSANVSNVKLCLALASAP EMESKLLSQLKVVRRIGNLLEFVYAKEMEDFLEPTLGLCKAFLLRSFSREKGLNFRQDPSLLTGSSSEADGCVEGIRNVADFGSNVGLLLQLGGSSEANL SEISSECVVLLLKAAPREATASFLTNLPKVGAILESWRSGAQHLVLLRMLHALCYSCRQYRSHSMILSISMAEISKLQVLVVELKSSAGAELXXXXXXXX XXXXXXXXXXXXXXXXXXXXXLCDFFLKTTSIFRFG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10012799 [exp]	0	1
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	1.0	0.9840
AT3G20150			Kinesin motor family protein (...		Lus10016589 [exp]	1.4	0.9822
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	2.2	0.9725
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Lus10010024 [exp]	2.4	0.9790
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	4.5	0.9780
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	5.5	0.9715
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	5.9	0.9709
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Lus10006604 [exp]	6.2	0.9471
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10016397 [exp]	6.6	0.9666
AT1G72250			Di-glucose binding protein wit...		Lus10005582 [exp]	7.5	0.9645

Compare expression of checked genes

Lus10012799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.