Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24830 776 / 0 arginosuccinate synthase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033978 [exp] 953 / 0 AT4G24830 767 / 0.0 arginosuccinate synthase family (.1.2) Lus10013207 [exp] 781 / 0 AT4G24830 724 / 0.0 arginosuccinate synthase family (.1.2) Lus10030725 [exp] 209 / 5e-66 AT4G24830 195 / 4e-61 arginosuccinate synthase family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G020200 [exp] 818 / 0 AT4G24830 761 / 0.0 arginosuccinate synthase family (.1.2) Potri.010G239000 [exp] 813 / 0 AT4G24830 754 / 0.0 arginosuccinate synthase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00764 [flax] [poplar] Arginosuc_synth Arginosuccinate synthase
Representative CDS sequence Show only first row Show all	>Lus10012800 pacid=23142335 polypeptide=Lus10012800 locus=Lus10012800.g ID=Lus10012800.BGIv1.0 annot-version=v1.0 ATGAACCAGTTGAAGGCGCTATATCCGGCCTCTTCCGCCAGCCTCATCTCCGACGGAGGACTCAGGCGAGGTAACTTGGGTTTGGCTTCTGCGGTGAAGC TGCAGTTCGGAGCCAGTGCAAGTGAGTTCCATGGTCGCACTCAATATTGTAGAGTTGTCAGGGCTCATAAAACTCCTGTCGTCAAAGCAGTTGCTTCCAG TGATAAAGAAACTGTTACCGCTGGAGCTGCAACTGGCAAGGGGTTGCGTGGTAAACTGAATAAGGTTGTTTTAGCTTACAGTGGTGGCTTAGACACATCA GTCATTGTGCCGTGGTTAAGGGAGAATTATGGCTGTGAGGTTGTCTGCTTTACTGCTGATGTTGGTCAGGGGATCAAAGAACTGGAAGGTTTGGAGCAGA AGGCCAAAGCTAGTGGAGCATGCCAATTAGTTGTGAAGGATTTACAGGAGGAATTTGTGAGGGACTACGTATTCCCATGTCTCCGTGCTGGTGCAATTTA TGAAAGGAAATACTTGCTAGGAACGTCAATGGCTCGTCCGGTGATTGCTAAGGCCATGGTCGATGTTGCCAAAGAGGTTGGAGCTGATGCTGTAGCACAT GGATGCACTGGAAAGGGGAATGATCAGGTGCGTTTTGAATTGACATTCTTTGCTTTAAACCCTGAGCTGAATGTTGTGGCTCCTTGGAGAGAATGGGATA TTCAAGGACGGGAAGATGCTATTGAGTATGCGAAGAAGCATAATGTACCAGTCCCGGTAACAAAGAAGTCTATATATAGCAGAGATAGGAACCTTTGGCA TTTGAGTCATGAGGGTGATATCTTGGAAGATCCGGCTAATGAGCCTAAAAATGATATGTACATGATGTCAGTGGCTCCAGAGGATGCACCAAACGAACCG GAATATGTTGAGATTGGTATAGTCTCTGGGCTTCCTGTTTCGGTCAATGGGAAGCAATTGTCACCGGCATCCATGGTCGCAGAGCTCAATGAGATTGGTG GCAAACATGGCATTGGTCGTATCGACATGGTTGAAAACCGTCTGGTTGGCATGAAAAGCCGTGGCGTGTACGAAACACCAGGAGGTACTATACTTTTCTC AGCGGTACGTGAGCTGGAGTCTCTGACACTTGACAGGGAGACAATCCAAGTGAAAGACTCACTAGCATTGAAGTACGCGGAGCTGGTTTATGCTGGTAGG TGGTTTGATCCACTTCGTGAATCCATGGACGCATTCATGGAGAAGATCACAGCAACAACCACTGGTTCCGTGACTCTGAAACTTTACAAGGGTTCTGTGT CGGTAGTAGGGAGAACAAGTCCACATAGTCTGTACAGGGAAGACATTTCGTCGTTTGAGAGCGGAGAGATATATGATCAAGCTGATGCTGCTGGGTTTAT TAGATTGTACGGTCTTCCCATGAGAGTTAGGGCAATGCTTGAAAAGGGTATCTGA
AA sequence Show only first row Show all	>Lus10012800 pacid=23142335 polypeptide=Lus10012800 locus=Lus10012800.g ID=Lus10012800.BGIv1.0 annot-version=v1.0 MNQLKALYPASSASLISDGGLRRGNLGLASAVKLQFGASASEFHGRTQYCRVVRAHKTPVVKAVASSDKETVTAGAATGKGLRGKLNKVVLAYSGGLDTS VIVPWLRENYGCEVVCFTADVGQGIKELEGLEQKAKASGACQLVVKDLQEEFVRDYVFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVAH GCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKNDMYMMSVAPEDAPNEP EYVEIGIVSGLPVSVNGKQLSPASMVAELNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFSAVRELESLTLDRETIQVKDSLALKYAELVYAGR WFDPLRESMDAFMEKITATTTGSVTLKLYKGSVSVVGRTSPHSLYREDISSFESGEIYDQADAAGFIRLYGLPMRVRAMLEKGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	0	1
AT1G74270			Ribosomal protein L35Ae family...		Lus10027754 [exp]	3.2	0.9458
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10003844 [exp]	3.3	0.9553
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10022012 [exp]	3.3	0.9252
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10022296 [exp]	4.9	0.9317
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	7.5	0.9432
AT3G06700			Ribosomal L29e protein family ...		Lus10037740 [exp]	9.8	0.9404
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10023730 [exp]	9.9	0.9291
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	10.5	0.9389
AT5G59850			Ribosomal protein S8 family pr...		Lus10040309 [exp]	10.6	0.9330
AT1G23280			MAK16 protein-related (.1)		Lus10000846 [exp]	12.7	0.9080

Compare expression of checked genes

Lus10012800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.