Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05030 778 / 0 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.1.2) AT5G27150 744 / 0 AT-NHX1, ATNHX1, NHX1 Na+/H+ exchanger 1, Na+/H+ exchanger 1 (.1) AT3G06370 681 / 0 ATNHX4, NHX4 sodium hydrogen exchanger 4 (.1) AT5G55470 612 / 0 ATNHX3 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) AT1G79610 185 / 1e-51 ATNHX6 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1) AT1G54370 160 / 9e-43 NHX5, ATNHX5 NA+/H+ ANTIPORTER 5, sodium hydrogen exchanger 5 (.1) AT1G14660 56 / 7e-08 ATNHX8 SODIUM HYDROGEN EXCHANGER 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8, Na+/H+ exchanger 8 (.1), Na+/H+ exchanger 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033840 [exp] 771 / 0 AT3G05030 854 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10004141 [exp] 767 / 0 AT3G05030 846 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10005934 [exp] 717 / 0 AT3G05030 768 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10040903 [exp] 714 / 0 AT3G05030 769 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10001718 [exp] 681 / 0 AT3G05030 748 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10018989 [exp] 668 / 0 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10016583 [exp] 592 / 0 AT5G55470 764 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10014891 [exp] 433 / 3e-148 AT5G55470 528 / 0.0 Na+/H+ \(sodium hydrogen\) exchanger 3, ARABIDOPSIS THALIANA NA+/H+ \(SODIUM HYDROGEN\) EXCHANGER 3, Na+/H+ (sodium hydrogen) exchanger 3 (.1) Lus10039131 [exp] 146 / 1e-37 AT1G79610 677 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G031500 [exp] 821 / 0 AT3G05030 792 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.005G045100 [exp] 785 / 0 AT3G05030 840 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G031700 [exp] 780 / 0 AT3G05030 834 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.014G134900 [exp] 712 / 0 AT3G05030 707 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.013G026600 [exp] 633 / 0 AT3G05030 548 / 0.0 sodium hydrogen exchanger 2 (.1.2) Potri.016G000200 [exp] 163 / 1e-43 AT1G79610 724 / 0.0 Na+/H+ antiporter 6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, Na+/H+ antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10012801 pacid=23142322 polypeptide=Lus10012801 locus=Lus10012801.g ID=Lus10012801.BGIv1.0 annot-version=v1.0 ATGGCGATTGGTGTGGAGGGTGGTAATATCATAATGGAAGCAAGGGCATTGCTGTCATCTGACCACGCTTCGGTGGTGTCGATCAACTTGTTTGTGGTGC TATTGTGCGCATGCATAGTCATTGGGCATCTGCTGGAAGAGAACCGATGGGTGAATGAGTCCATCACTGCCCTCTTCATAGGAGTATGCACTGGAGTGGT GATTCTGTTGGTATCCAAAGGAAAAAGTTCACGGCTTTTGGTGTTTAGTGAAGAGCTTTTCTTTATTTATCTTCTTCCACCAATTATTTTCAATGCTGGA TTTCAAGTAAAAAAGAAGCAGTTTTTTCGGAATTTCTTGACCATCACACTCTTTGGTGCAATTGGTACTCTAATATCTACGGCTGTCATCACAGCAGGAG CTATCTACTTTTTCAAGAGTAAGAACATCAGTTCTCTAAGCATAGCAGACTATCTTGCAATTGGAGCGATATTTTCTGCTACGGATTCGGTGTGCACGCT GCAGGTGCTAAATCAAGACGAGACACCATTACTGTACAGCTTAGTGTTCGGAGAAGGTGTAGTGAACGACGCGACATCAGTGGTGCTGTTCAATGCGATA CAGAGCATAGACTTCTCACACATAAGCTCCATTGCTTCCCTGGAGTTCATCGGCAGCTTTCTCTACTTACTCCTCTCAAGCACCATCTTAGGAGTTGCTG TTGGACTATTGAGCGCATACACTATTAAGACACTCTGTTTTGGCAGACATTCAACCGATCGCGAAGTTTCTATAATGATTCTCATGGCTTACCTTTCATA CATGCTCGCCGAGCTATTCTCTTTAAGTGCAATTCTCACGGTGTTCTTCTGTGGGATCGTCATGTCACATTACACTTGGCACAATGTGACCCAAAGCTCT AGGGTGACAACCAAGCATGCATTTGCAAGCATGTCATTTGTTGCTGAGATCTTCCTGTTCCTGTACGTCGGGATGGATGCTCTGGATATCGAGAAGTGGA AGTTTGTGAGTGATAGTCCTGGAACATCAATAGCGGCGAGCTCAATACTGATGGGACTGGTTCTGGTTGGGAGAGCAGCTTTTGTCTTCCCATTATCCTT CCTATCCAACCTCACAAAGAAGTTCCCTTCCGACAAACTAACCTTGAATCAACAAGTAACAATTTGGTGGGCCGGCCTAATGCGTGGCGCTGTCTCCATG GCTCTTGCTTATAATCACTTTACCAACTCGGGTCATACAAAATTACGCCCAAATGCAATCATGATCACAAGCACTATCACTATCGTCCTCTTCAGTACCG CGGTATTTGGGTTGATGACCAAACCGCTAATCAAGATTCTACAACCACAACCAACAAAAGAAACATCTAATTCAGAACCATCAAGTCCAAAGTCCACAAT CACAGTTCCACTTCTGATTAACGAATTAGAGAACTCATCCGAGGTGGAGCTGCTGCTGCATCAAGAAGAAGAAACTAGGAATTTACTACGCAGGCCGACA AGTCTGAGAATGTTCTTGAGAACACCTTCATATTCGATCCATCAGTATTGGAGGAAGTTTGATGATGGGTTCATGCGACCTGTCTTTGGTGGTAGAGGCT TTGTCCCTTTTGCCCCTGGCTCCCCTATTGAATCAGACCACCAACCTTTCGATGGCCACCACAATATATAG
AA sequence Show only first row Show all	>Lus10012801 pacid=23142322 polypeptide=Lus10012801 locus=Lus10012801.g ID=Lus10012801.BGIv1.0 annot-version=v1.0 MAIGVEGGNIIMEARALLSSDHASVVSINLFVVLLCACIVIGHLLEENRWVNESITALFIGVCTGVVILLVSKGKSSRLLVFSEELFFIYLLPPIIFNAG FQVKKKQFFRNFLTITLFGAIGTLISTAVITAGAIYFFKSKNISSLSIADYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAI QSIDFSHISSIASLEFIGSFLYLLLSSTILGVAVGLLSAYTIKTLCFGRHSTDREVSIMILMAYLSYMLAELFSLSAILTVFFCGIVMSHYTWHNVTQSS RVTTKHAFASMSFVAEIFLFLYVGMDALDIEKWKFVSDSPGTSIAASSILMGLVLVGRAAFVFPLSFLSNLTKKFPSDKLTLNQQVTIWWAGLMRGAVSM ALAYNHFTNSGHTKLRPNAIMITSTITIVLFSTAVFGLMTKPLIKILQPQPTKETSNSEPSSPKSTITVPLLINELENSSEVELLLHQEEETRNLLRRPT SLRMFLRTPSYSIHQYWRKFDDGFMRPVFGGRGFVPFAPGSPIESDHQPFDGHHNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10012801 [exp]	0	1
AT2G29525		AtIPCS3	Arabidopsis Inositol phosphory...		Lus10040720 [exp]	5.6	0.6544
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10035056 [exp]	6.7	0.6390
AT5G05450			P-loop containing nucleoside t...		Lus10009838 [exp]	10.2	0.6211
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10028755 [exp]	13.4	0.6501
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10017915 [exp]	28.7	0.5742
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	34.6	0.6170
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004562 [exp]	35.9	0.6082
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10014123 [exp]	39.3	0.6307
AT1G10750			Protein of Unknown Function (D...		Lus10029116 [exp]	39.3	0.6044
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10010538 [exp]	48.4	0.5784

Compare expression of checked genes

Lus10012801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.