Plant FIBer expression Database

Lus10012802 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G031250
[exp]
109 / 2e-27 ND /
Potri.008G195300
[exp]
103 / 3e-25 ND /
PFAM info
Representative CDS sequence
>Lus10012802 pacid=23142347 polypeptide=Lus10012802 locus=Lus10012802.g ID=Lus10012802.BGIv1.0 annot-version=v1.0
ATGCGTACAGACCCCTCGCCATTTGGAATACCACCGCCTACAAAACGCTCTAAAGTTTCATCAAGTCAGCTTCCATCACTAGGAGGTGATGATCTAGATA
AACCTTCAGGGTTGACGAAATTCACAGGCTGTAGGGTTAAAGATTTTCAACCACAATCAGCATCTGGTACTGGAACTAAGATTCCTAATTATAACTCTGC
CGTATCCAAGTATGATGGGCACAACAACAATTTCGGCTTGGTGAAGAAAGATCTTCCAATTCCTCTTGCTACCAAAATTTATTACTCACAGAGGAGTAAT
CATCGCCTGAGGTCAGCAGTAGCTCATATGTATTACGCATCGTCCAACGAAGGGATCTCATGCGATATGAGTCCAGATGTCTCTCATGGAAGGAATCAAC
TGAATGCTTCGACACAGATAGATGAACAGGTGGATGAAATCACTGACAAGGAGGAAGATCATTCTACATATACACCCGGACAAATTTCTGAGGTGGGCTT
CAATGAGTATGAAGGATGCTGCCTACAAGACACCAACATATCAACTCAGTTTCCTGTCAGTAATCTGCTAGTGCCTCAGACGCCACCCATTGGACTACTC
GGAAGTAAATATCTTTCCAATCCTTATTCCCTTGGCGGGAACTCAGCATCATGGTTTCTGGAGAAATGGCTGTGTCGACTGATTTTAACTAGCACTGCTC
TTTTGTTGATGGCATTCCGCCAACACCTCTCCTACCACACATTACTAAAGGTGGCTCTCCGCATCACTCGGATGGAACCGGCAGCGGGGAATTGCCCGCT
GAGCTTGCAGCAACAGACATCATCTCAGCCTGCCAATCAGTAG
AA sequence
>Lus10012802 pacid=23142347 polypeptide=Lus10012802 locus=Lus10012802.g ID=Lus10012802.BGIv1.0 annot-version=v1.0
MRTDPSPFGIPPPTKRSKVSSSQLPSLGGDDLDKPSGLTKFTGCRVKDFQPQSASGTGTKIPNYNSAVSKYDGHNNNFGLVKKDLPIPLATKIYYSQRSN
HRLRSAVAHMYYASSNEGISCDMSPDVSHGRNQLNASTQIDEQVDEITDKEEDHSTYTPGQISEVGFNEYEGCCLQDTNISTQFPVSNLLVPQTPPIGLL
GSKYLSNPYSLGGNSASWFLEKWLCRLILTSTALLLMAFRQHLSYHTLLKVALRITRMEPAAGNCPLSLQQQTSSQPANQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10012802
[exp]
0 1
AT3G20190 Leucine-rich repeat protein ki... Lus10033339
[exp]
2.8 0.8400
AT5G58240 FHIT FRAGILE HISTIDINE TRIAD (.1.2) Lus10019126
[exp]
5.1 0.8268
AT3G19670 ATPRP40B pre-mRNA-processing protein 40... Lus10006142
[exp]
18.3 0.8028
AT1G59520 CW7 CW7 (.1.2.3) Lus10003786
[exp]
24.7 0.8131
AT2G21470 EMB2764, ATSAE2... EMBRYO DEFECTIVE 2764, SUMO-ac... Lus10028804
[exp]
25.4 0.8157
AT2G26590 RPN13 regulatory particle non-ATPase... Lus10021598
[exp]
26.2 0.8214
AT1G44910 ATPRP40A pre-mRNA-processing protein 40... Lus10007723
[exp]
29.8 0.8070
AT1G60200 splicing factor PWI domain-con... Lus10029161
[exp]
46.5 0.8041
AT1G04950 EMB2781, ATTAF6... TBP-associated factor 6, EMBRY... Lus10016578
[exp]
48.1 0.8065
AT5G19280 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kina... Lus10034062
[exp]
49.4 0.7839

Lus10012802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.