Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47900 474 / 4e-168 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT5G18680 397 / 5e-138 TUB AtTLP11 tubby like protein 11 (.1) AT3G06380 392 / 5e-136 TUB ATTLP9 tubby-like protein 9 (.1) AT1G43640 369 / 3e-126 TUB AtTLP5 tubby like protein 5 (.1) AT2G18280 366 / 1e-125 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G25280 364 / 4e-124 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 354 / 4e-120 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G47270 341 / 1e-115 TUB AtTLP6 tubby like protein 6 (.1.2) AT1G53320 327 / 2e-110 TUB AtTLP7 tubby like protein 7 (.1) AT1G61940 69 / 3e-13 TUB AtTLP4 tubby like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033977 [exp] 644 / 0 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10028579 [exp] 389 / 3e-134 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10018884 [exp] 387 / 2e-133 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10029780 [exp] 370 / 1e-126 AT1G76900 615 / 0.0 tubby like protein 1 (.1.2) Lus10034106 [exp] 367 / 3e-125 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3) Lus10043482 [exp] 361 / 4e-123 AT1G25280 589 / 0.0 tubby like protein 10 (.1.2.3) Lus10010645 [exp] 360 / 4e-123 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10033208 [exp] 357 / 6e-122 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10033209 [exp] 355 / 6e-121 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G031000 [exp] 540 / 0 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.008G195200 [exp] 533 / 0 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G192400 [exp] 401 / 5e-139 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.005G192300 [exp] 400 / 1e-138 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 393 / 6e-136 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G121600 [exp] 375 / 7e-129 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.002G034600 [exp] 369 / 3e-126 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.005G228500 [exp] 368 / 5e-126 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.007G023400 [exp] 366 / 2e-125 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.001G390200 [exp] 339 / 2e-115 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10012803 pacid=23142370 polypeptide=Lus10012803 locus=Lus10012803.g ID=Lus10012803.BGIv1.0 annot-version=v1.0 ATGCCGGAAGAGCTCTTGAGGGAAGTGTTGCTCCGAATCGAGTCGTCGGAGACCAGCTGGCCACCGAGGAAGAGCGTCGTCGCTTGTGCCGGGGTTTGCC GTAGCTGGAGGCACATCACTAAGGATATCGTCAGAGTCACGGAGCTCTCCGCCAAGCTCACCTTTCCAATTTCTCTCAAACAGCCTGGACCTCGGGATAT TCTTCTTCAGTGCTTTATAAAGAGATGCCGAACCTCTCAGACTTACTATCTTTACCTCAGCTTGACCAGTGCACTAGCTGATGACGGAAAGTTCCTTCTT GCTGCACGCAAATCCAGACGACCCACCTGCACAGACTATATCATCTCTTTAGATGCTGATGATATGTCAAAGTGTAGCGGTACATATGTTGGAAAACTCA GATCAAATTTTCTTGGGACCAAATTCACAGTCTTTGACGGTCACCCACCTCATGCTGGGGCCAAGCTGATAAGAAGTCGTTCCACTAAGCCAGTAAGTTT GAAACAAATTTCGCCAAGAGTCCCTGCTGGCAATTATCCAGTGGCTCACATCTCCTATGAATTGAACATGCTGGGTTCCAGAGGTCCACGAAGAATGCAC TGTACTATGGATGGCATACCTGCCTCTTCTGTTGAACCTGGTGGCACAGCTCCTACACAGACTGAGTTCTCTCATCGTAAGCTTGATGTCTCTCCGTCAC TTTCGTTTCTCCGGTCCAAATCAAACATTCCGAAAGATTCAGCCCCCTCGTCTGATCCGAAGAATGGGGCGTTGGTACTGAAAAACAAGTCTCCAAGGTG GCACGAACATCTACAGTGTTGGTGCTTGAATTTCCATGGACGAGTAACGGTTGCGTCAGTGAAAAACTTCCAGCTGGTTGCTTCTGCCGAAAACGGAGTG GCTGGACCAGAACATGAGAAAATAATTCTGCAATTCGGGAAAGTTGGAAAGGATTTGTTCACCGTGGATTACCGGTATCCCATATCTGCGTTCCAAGCAT TCGCAATTTGTCTCAGTAGCTTCGACACCAAGATAGCTTGCGAGTAA
AA sequence Show only first row Show all	>Lus10012803 pacid=23142370 polypeptide=Lus10012803 locus=Lus10012803.g ID=Lus10012803.BGIv1.0 annot-version=v1.0 MPEELLREVLLRIESSETSWPPRKSVVACAGVCRSWRHITKDIVRVTELSAKLTFPISLKQPGPRDILLQCFIKRCRTSQTYYLYLSLTSALADDGKFLL AARKSRRPTCTDYIISLDADDMSKCSGTYVGKLRSNFLGTKFTVFDGHPPHAGAKLIRSRSTKPVSLKQISPRVPAGNYPVAHISYELNMLGSRGPRRMH CTMDGIPASSVEPGGTAPTQTEFSHRKLDVSPSLSFLRSKSNIPKDSAPSSDPKNGALVLKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVASAENGV AGPEHEKIILQFGKVGKDLFTVDYRYPISAFQAFAICLSSFDTKIACE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10012803 [exp]	0	1
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	9.2	0.8868
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10010126 [exp]	10.3	0.8801
AT4G03020			transducin family protein / WD...		Lus10029621 [exp]	16.9	0.8593
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	21.4	0.8720
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10034017 [exp]	23.0	0.8599
AT3G06760			Drought-responsive family prot...		Lus10010305 [exp]	24.0	0.8626
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	28.0	0.8644
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	29.4	0.8184
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	34.0	0.8190
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	37.1	0.8633

Compare expression of checked genes

Lus10012803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.