Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18670 549 / 0 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT3G23920 350 / 3e-114 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 337 / 1e-109 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT5G55700 323 / 3e-104 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G32290 286 / 2e-89 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G00490 281 / 7e-88 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT4G15210 267 / 3e-83 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G45880 261 / 4e-79 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 241 / 2e-71 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033976 [exp] 1028 / 0 AT5G18670 541 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1) Lus10001087 [exp] 343 / 7e-112 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 339 / 2e-110 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10023700 [exp] 326 / 5e-105 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10004396 [exp] 325 / 1e-104 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10016615 [exp] 320 / 2e-103 AT5G55700 734 / 0.0 BETA-AMYLASE 6, beta-amylase 4 (.1.2) Lus10003005 [exp] 317 / 4e-102 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 315 / 4e-101 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10039701 [exp] 293 / 2e-91 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204200 [exp] 650 / 0 AT5G18670 552 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1) Potri.001G148900 [exp] 344 / 3e-112 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.008G174100 [exp] 342 / 4e-111 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G085500 [exp] 340 / 6e-111 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 339 / 7e-110 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 288 / 2e-90 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.003G143500 [exp] 276 / 1e-85 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 273 / 7e-85 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083800 [exp] 268 / 5e-83 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.014G083700 [exp] 251 / 2e-75 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10012804 pacid=23142351 polypeptide=Lus10012804 locus=Lus10012804.g ID=Lus10012804.BGIv1.0 annot-version=v1.0 ATGGAGGTTTCGTTGATCGGCAGTTCTCAGGGGACTTTCTGCGTGGGGGAGTTTGCTCCTTGCAGGGAGCTCAGGCTATGCGTTCCCACGAGAAATGGTG AAGCTCTCTCCTTCTTCGATCGAAGTTCAAGGAGGTGCAGAAATTCCCGTCTTCGGCTTAACATCACCGCCGGCCAAACCGAACCCGTCCGGTCCGACAG CTTTCCGGTTCACGATTCTGCTACGAGACCCAATTCCATCGATAGAGTAAGGCTATTTGTTGGGTTGCCGTTGGATGTGGTCTCTGAATGCAACAGTGTA AACCATTCGAGAGCCATAACAGCAGGGCTTAAAGCTCTGAAATTGCTAGGGATTGAAGGTGTTGAGCTTCCGTTATGGTGGGGGTTAGTGGAAAAGGAAG GAAAGGGGAGATATGATTGGTCAGGTTACCTTGCAGTTGCAGAGATGGTTCAAAATGCCGACCTAAAGTTACACGTCTCGCTCAATTTCCATGCCAATAA CCATCCCAAGGTTTCACTTCCACAGTGGATTTCAAAGATTGGTGAATCCAATCCCAGCATCTTTTACCGTGATCGCTCCGGGGATGTTTATAAGGATTGC TTATCTTTGGGTGTGGATGATCTTCCTGTTCTGGATGGAGAGACTCCTCTTCAGGTTTACAAGGATTTTTGTGACAGCTTCAAGTCTTCATTTGCCCACT TCTTGGGCTCTACCGTCACGAGTGTGACAATGGGGCTAGGACCAGACGGTGAGCTGAGATATCCATCTCATCACAAGCTATCCAACAATGGCGAATTTCC TGCTGGGGTTGGAGAGTTCCAATGTTATGACAAGAACATGATGAACCTCCTGAAGCAACATGCTGAAGCGTACGGATTCCCCTTATGGGGACTCGGAGGC CCTCACGATGCACCGAGTTACAACCAATCCCCCGATTCGAACGGCTTCTTCAAGGAGCTCTCTGGATCGTGGGAATCGCCCTACGGCGATTTCTTCCTTT CGTGGTATTCAAAGCAGTTATTGTCTCACGGGGATCGCATTCTCTCCATGGCATTTGATGTTTTCAGCAACAGTGGTGTGGCGATTCATGGCAGGGTCCC TCTGTTACATTCCTGGTACAGAACCCGCTCGAGAGCGTTAGAGAACACGGCTGGATTCTACAACACAGACAGCAAGGACGGGTACGAAGCAGTAGCCGAA ATTTTCGCTAGGAATAGTTGCAGGATGATGCTGCCGGGAATGGACTTGTCGGATGATGAACAGCCTCAGGAGTCGATGTCGAGCCCTGAGCTGTTGCTTG CTCAGATTCAAGCTGCCTGCAAGAGGCATGGAGTTGGGGTTTCGGGGATGAACTCGAAACCTGTTTCTAACGGATTTGATCAGATAAGGAAGAATGTTAT GGGGGAGAAGGATGTGGTTGATTTGTTCAGTTACCAGAGAATGGGAGCTGAGTTCTTCTCGCCGGAGAATTTTCCGTCTTTCACTCAGTTTGCCCGGAGC CTGAGTCAGCCGGCTACACATCCGGATGATCTTCCCCAGCAGAAGATGGTTGAGTCTGTACCGTCTACCTCTGAATCAGGCATTGAAATGCAAACAGCGT AG
AA sequence Show only first row Show all	>Lus10012804 pacid=23142351 polypeptide=Lus10012804 locus=Lus10012804.g ID=Lus10012804.BGIv1.0 annot-version=v1.0 MEVSLIGSSQGTFCVGEFAPCRELRLCVPTRNGEALSFFDRSSRRCRNSRLRLNITAGQTEPVRSDSFPVHDSATRPNSIDRVRLFVGLPLDVVSECNSV NHSRAITAGLKALKLLGIEGVELPLWWGLVEKEGKGRYDWSGYLAVAEMVQNADLKLHVSLNFHANNHPKVSLPQWISKIGESNPSIFYRDRSGDVYKDC LSLGVDDLPVLDGETPLQVYKDFCDSFKSSFAHFLGSTVTSVTMGLGPDGELRYPSHHKLSNNGEFPAGVGEFQCYDKNMMNLLKQHAEAYGFPLWGLGG PHDAPSYNQSPDSNGFFKELSGSWESPYGDFFLSWYSKQLLSHGDRILSMAFDVFSNSGVAIHGRVPLLHSWYRTRSRALENTAGFYNTDSKDGYEAVAE IFARNSCRMMLPGMDLSDDEQPQESMSSPELLLAQIQAACKRHGVGVSGMNSKPVSNGFDQIRKNVMGEKDVVDLFSYQRMGAEFFSPENFPSFTQFARS LSQPATHPDDLPQQKMVESVPSTSESGIEMQTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Lus10012804 [exp]	0	1
AT3G10113	MYB		Homeodomain-like superfamily p...		Lus10031893 [exp]	3.9	0.8932
AT3G14280			unknown protein		Lus10003937 [exp]	5.7	0.9050
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	8.4	0.9283
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10000354 [exp]	9.6	0.8733
AT4G02830			unknown protein		Lus10014664 [exp]	11.6	0.9206
					Lus10012313 [exp]	12.0	0.8996
AT3G14470			NB-ARC domain-containing disea...		Lus10016316 [exp]	12.8	0.9149
AT1G29010			unknown protein		Lus10015398 [exp]	13.5	0.8351
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	15.2	0.9219
AT4G38960	CO		B-box type zinc finger family ...		Lus10035472 [exp]	15.3	0.8733

Compare expression of checked genes

Lus10012804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.