Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54610 780 / 0 Protein kinase superfamily protein (.1.2.3) AT3G05050 701 / 0 Protein kinase superfamily protein (.1) AT5G50860 662 / 0 Protein kinase superfamily protein (.1) AT1G53050 642 / 0 Protein kinase superfamily protein (.1) AT1G09600 579 / 0 Protein kinase superfamily protein (.1) AT1G74330 572 / 0 Protein kinase superfamily protein (.1.2) AT1G71530 559 / 0 Protein kinase superfamily protein (.1.2) AT1G18670 557 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G03740 546 / 0 Protein kinase superfamily protein (.1.2) AT1G57700 545 / 0 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033975 [exp] 1096 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 836 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 835 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 660 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 659 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 584 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10015727 [exp] 574 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10039836 [exp] 568 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10031651 [exp] 563 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204400 [exp] 931 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 862 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 860 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 721 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 720 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 668 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 664 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 621 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.012G067800 [exp] 585 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 585 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012805 pacid=23142327 polypeptide=Lus10012805 locus=Lus10012805.g ID=Lus10012805.BGIv1.0 annot-version=v1.0 ATGGGTTGTGTGTTCGGCAAACCAGTGACCCCCAACCGCCCTTCTGCTGGCGTTACCCGAACCCAAGAACAGTTTCACCACAACCGCCATCAAGTCCCTG GAGCAGCTTCCCAAACTGAGCTTAGGAATGGCGACGGTGCTAAAGAATCAGAGGAAGATCCTCAAACATCATCGGCAGGTGCTGCTGCTAGTGTCAGTAA GCCCAAAGGTGAGCGGTCCACCAGAAGGTCTTCCAAGCCTAATCCTCGCCTGAGCAATCCTCCCAAGCATCTCCACGGTGAGCAAGTCGCCGCTGGTTGG CCCTCCTGGCTCTCCGCCGTCGCCGGCGAGGCCATCAATGGCTGGACCCCTCGCCGCGCTGACACTTTTGAGAAGCTTGATAAGATTGGGCAAGGTACAT ACAGCAATGTATACAAGGCTAGGGATTCTGTGAGCGGAAAGATTGTGGCTTTGAAGAAGGTTAGGTTCGATAACTTGGAGCCGGAGAGTGTTAGGTTCAT GGCGAGGGAGATTTTGATACTGAGGAGATTGAATCATCCCAATGTAGTGAAACTTGAAGGCTTGGTCACTTCAAGGATGTCTTGCAGTTTGTACCTTGTC TTTGAGTACATGGAGCATGATTTGGCTGGACTTGCAGCTAGCCCAACTATCACTTTCACGGAGCCTCAGGTTAAATGCTATATGCACCAGTTGTTATCTG GCCTTGAACATTGTCACAATCGCCATGTGCTGCATCGTGATATTAAGGGTTCGAATCTTCTTATTGGCAATGATGGTGTTCTTAGAATTGCTGATTTTGG GTTGGCTTCCTTCTTTGATCCTAATCACAAGCAGCCCATGACGAGTAGGGTGGTTACATTGTGGTATCGCCCCCCTGAGCTTCTTCTAGGAGCCACTGAC TATGGTGTTGGCGTTGATCTGTGGAGTGCCGGTTGCATTCTCGCAGAATTGTTGGCTGGGAAGCCAATCATGCCTGGTCGTACTGAGGTGGAACAACTAC ACAAGATCTTTAAACTATGTGGCTCTCCTTCTGAAGACTACTGGAAAAAGTCGAAGCTGCCGCATGCTACCATATTTAAACCTCAACAAGCATACAAGCG ATGCATAGCTGAGACATTCAAAGACTTCCCTCCTTCTTCGCTTCCGTTGATTGAAACACTTCTCGCTATTGACCCAGCTGAAAGGCAAACTGCTACTGCT GCATTACGCAGTGAATTCTTCACCACTAAGCCATATGCTTGTGATCCTTCTAGTCTTCCAAAATACCCTCCCACAAAGGAGATGGATGCTAAAATACGCG ACGAAGAAGCTAGAAGGTTGAGAGCTGCGGGAAAGGCTAATGGTGATGTTGCAAAGAGGTCGCGTCCTCGAGACCGAGTCATGAAAGCAATTCCCGCCCC CGAAGCAAATGCTGAGCTTCAAGCCAATCTTGATAGGCGGCGGCTAATAACACATGCAAATGCAAAGAGCAAGAGTGAGAAGTTCCCTCCTCCACACCAA GATGGAGCACTTGGTTACCCACTTGGAACTTCCCATCACATTGATCCCTCATACGACCCGCCCGAAGTTCCATTCAGTTCGACAAACTTCTCGTACCCGA AAACTCACGTACAGACCTGGTCAGGCCCATTGGTTGACTCGGGCACAGGCGGTGCTCCGAGGAGAAGGAAGCAGAAGGATAGAAGTTCTGCTCGTGTTAA AGACAAAGAAATCATGTAA
AA sequence Show only first row Show all	>Lus10012805 pacid=23142327 polypeptide=Lus10012805 locus=Lus10012805.g ID=Lus10012805.BGIv1.0 annot-version=v1.0 MGCVFGKPVTPNRPSAGVTRTQEQFHHNRHQVPGAASQTELRNGDGAKESEEDPQTSSAGAAASVSKPKGERSTRRSSKPNPRLSNPPKHLHGEQVAAGW PSWLSAVAGEAINGWTPRRADTFEKLDKIGQGTYSNVYKARDSVSGKIVALKKVRFDNLEPESVRFMAREILILRRLNHPNVVKLEGLVTSRMSCSLYLV FEYMEHDLAGLAASPTITFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGVLRIADFGLASFFDPNHKQPMTSRVVTLWYRPPELLLGATD YGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWKKSKLPHATIFKPQQAYKRCIAETFKDFPPSSLPLIETLLAIDPAERQTATA ALRSEFFTTKPYACDPSSLPKYPPTKEMDAKIRDEEARRLRAAGKANGDVAKRSRPRDRVMKAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQ DGALGYPLGTSHHIDPSYDPPEVPFSSTNFSYPKTHVQTWSGPLVDSGTGGAPRRRKQKDRSSARVKDKEIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	0	1
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	1.0	0.9533
AT1G45207			Remorin family protein (.2)		Lus10042649 [exp]	1.4	0.9419
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	1.7	0.9368
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	2.0	0.9366
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	3.2	0.9345
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10007984 [exp]	3.7	0.9151
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	4.0	0.9133
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034620 [exp]	4.2	0.9256
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10025980 [exp]	4.6	0.9287
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	4.8	0.9084

Compare expression of checked genes

Lus10012805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.