Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39080 374 / 7e-130 EMB2799 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033974 [exp] 543 / 0 AT2G39080 413 / 3e-145 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038637 [exp] 416 / 4e-147 AT2G39080 402 / 3e-141 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037911 [exp] 206 / 1e-66 AT2G39080 187 / 5e-59 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204700 [exp] 423 / 4e-149 AT2G39080 462 / 3e-164 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012806 pacid=23142377 polypeptide=Lus10012806 locus=Lus10012806.g ID=Lus10012806.BGIv1.0 annot-version=v1.0 ATGGATGCAGCAACCATTTCCTGGCGTTGCTGTTCCCCACTCCCTCTCCCAAACCGCTCCCTTCTTCCACTCCGCTCTCCGCGTCTTACCAGACACCCAT TTCTGAAGTCCCCCTTGCATTTATCCATGGCGTCGTCGCCTCTTCAAGTATCTTCCTCCTCCTCCACCATTGGTGCCGAGGACGATCAAGCGACTAAAAC GACGGCGTCTTCTGGTGTGGTGGGACAGACTGATCTGCTCATTGTTGGACCGGGAGTGTTGGGTCGCTTAGTGGCTGAGATATGGCGGCAGGAACACCCT GGTTGTCAAATTGTTGGGCAAACAATGACGGAGGATCATCACGAAGAATTGGTCAATTTGGGGATAAATCCTTATCTGAGAGGGACTCAATCCAGTCAAC GATATCCTTATGTTATCTTCTGTGCTCCTCCTTCTCGAACTGCCGATTACCCCGGCGATGTCAGGGAAGCTACTTTAAGATGGAATGGAGAAGGCTGTTT CTTGTTTACCTCGAGCTCCGCACCTTACGATTGCCACGACAATGGGGAGTGTAATGAGGACTCTCCAGTTGTGCCAATAGGGAGAAGCCCCAGAACAGAC GTCCTTCTTAAAACAGAGAAAGTAGTTGTGGAAAATAGAGGTGCTCATACTTACTGGTTGGAGAAAGGGACAGTCGACATCCGACCCGATCACGTACTTA ATCTCATACACTACGAGGATTCTGCTTCGCTCTGCGTAACAATCCTGAAGAAGAAACTCCGGGGCCAAATCTTTCTGGGCTGCGATAACCATCCATTGTC TCGACAAGAAGTTATGGACTTGGTTACTAAAAGCGGCAAATTCAGCAAAAAATTCGAGGGTTTTACTGGAACCAGCGGTCCCCTTGGTAAGAGACTGAAC AACTCGAGAACCCGGAAGGAGCTTTCATGGGAGCCTAAGTATCCCAGCTTAGCTCATTTCCTTGGAGTGGCCACACAATCACAATGA
AA sequence Show only first row Show all	>Lus10012806 pacid=23142377 polypeptide=Lus10012806 locus=Lus10012806.g ID=Lus10012806.BGIv1.0 annot-version=v1.0 MDAATISWRCCSPLPLPNRSLLPLRSPRLTRHPFLKSPLHLSMASSPLQVSSSSSTIGAEDDQATKTTASSGVVGQTDLLIVGPGVLGRLVAEIWRQEHP GCQIVGQTMTEDHHEELVNLGINPYLRGTQSSQRYPYVIFCAPPSRTADYPGDVREATLRWNGEGCFLFTSSSAPYDCHDNGECNEDSPVVPIGRSPRTD VLLKTEKVVVENRGAHTYWLEKGTVDIRPDHVLNLIHYEDSASLCVTILKKKLRGQIFLGCDNHPLSRQEVMDLVTKSGKFSKKFEGFTGTSGPLGKRLN NSRTRKELSWEPKYPSLAHFLGVATQSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10012806 [exp]	0	1
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10025797 [exp]	17.2	0.7732
AT3G14410			Nucleotide/sugar transporter f...		Lus10016923 [exp]	27.5	0.7794
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	36.5	0.7401
AT5G21050			unknown protein		Lus10019547 [exp]	45.7	0.7195
AT2G02410			unknown protein		Lus10042400 [exp]	52.0	0.7498
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	54.7	0.7434
AT5G38790			unknown protein		Lus10034101 [exp]	58.5	0.7453
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10018058 [exp]	62.9	0.7131
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10015915 [exp]	83.5	0.7175
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	92.3	0.7226

Compare expression of checked genes

Lus10012806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.