Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15563 147 / 7e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033973 [exp] 303 / 7e-106 AT4G15563 144 / 2e-43 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204800 [exp] 173 / 7e-55 AT4G15563 143 / 6e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012807 pacid=23142338 polypeptide=Lus10012807 locus=Lus10012807.g ID=Lus10012807.BGIv1.0 annot-version=v1.0 ATGACCGGAAGAGTGAATGCGGTGATTGGGATCGTTACTCGACGCTGTCTAACTGAATCAATTGAAGTTGGGGATTACCTTAAAGCAATCGGGGAATTGA GTGCCATGGAGCTGGGCTTTGGAGATGTTCAAATGCTCCTCTTCAAACCAAACTTATCCGTTCTGCTTAACTTAGTTGCCTTGCATTACTGTATCTTCTG CCTTCAATCTCCGGGCTGGGAGGTTGTGGATGCACTCAAAAGCTGCAAGATATCAGAGAGGCAAGTGTGCGTGAAATGGTGGAAGCTGGGAAGATGGTTC TATGGATTCCGGATGAGGGACGAATCGCATTCTCGTCAGGTTTCCCTTGAAGAGATGGTGACGGCGGAGGAAGGTAAGGAGGTCTTCGGAGTTCTTCATC GGGGCGCCATTCATGAGGTCTTGCGTGTTTTGATCTGTGTCACAACTGTTGCTTCCAGTCCATGGCCTTGTTCAAGCACAGAATGA
AA sequence Show only first row Show all	>Lus10012807 pacid=23142338 polypeptide=Lus10012807 locus=Lus10012807.g ID=Lus10012807.BGIv1.0 annot-version=v1.0 MTGRVNAVIGIVTRRCLTESIEVGDYLKAIGELSAMELGFGDVQMLLFKPNLSVLLNLVALHYCIFCLQSPGWEVVDALKSCKISERQVCVKWWKLGRWF YGFRMRDESHSRQVSLEEMVTAEEGKEVFGVLHRGAIHEVLRVLICVTTVASSPWPCSSTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15563			unknown protein		Lus10012807 [exp]	0	1
AT3G56310			Melibiase family protein (.1.2...		Lus10029046 [exp]	4.6	0.9060
AT2G23790			Protein of unknown function (D...		Lus10019663 [exp]	6.7	0.8911
					Lus10030943 [exp]	8.1	0.9097
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020320 [exp]	12.2	0.9003
AT5G40670			PQ-loop repeat family protein ...		Lus10032114 [exp]	13.2	0.8850
AT1G07040			unknown protein		Lus10030795 [exp]	14.7	0.8824
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10018002 [exp]	14.9	0.8909
AT5G41800			Transmembrane amino acid trans...		Lus10003903 [exp]	17.6	0.9016
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	18.8	0.8705
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Lus10007764 [exp]	22.4	0.8714

Compare expression of checked genes

Lus10012807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.