Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06390 97 / 8e-26 Uncharacterised protein family (UPF0497) (.1) AT4G15610 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) AT4G20390 56 / 5e-10 Uncharacterised protein family (UPF0497) (.1) AT5G44550 54 / 2e-09 Uncharacterised protein family (UPF0497) (.1) AT4G15620 53 / 3e-09 Uncharacterised protein family (UPF0497) (.1) AT2G36100 53 / 3e-09 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT3G11550 52 / 1e-08 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT4G15630 52 / 1e-08 Uncharacterised protein family (UPF0497) (.1) AT4G03540 51 / 1e-08 Uncharacterised protein family (UPF0497) (.1) AT1G14160 51 / 2e-08 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011179 [exp] 56 / 2e-10 AT1G03700 155 / 7e-49 Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 56 / 5e-10 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10029409 [exp] 55 / 1e-09 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 54 / 1e-09 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10033972 [exp] 54 / 2e-09 AT4G15610 46 / 3e-06 Uncharacterised protein family (UPF0497) (.1) Lus10015443 [exp] 52 / 1e-08 AT1G03700 127 / 2e-37 Uncharacterised protein family (UPF0497) (.1) Lus10004205 [exp] 52 / 1e-08 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10015375 [exp] 50 / 3e-08 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 50 / 6e-08 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205000 [exp] 113 / 2e-32 AT3G06390 130 / 4e-38 Uncharacterised protein family (UPF0497) (.1) Potri.001G442300 [exp] 56 / 2e-10 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 54 / 6e-10 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.011G154900 [exp] 53 / 3e-09 AT4G20390 169 / 1e-53 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 51 / 1e-08 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 50 / 3e-08 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 50 / 4e-08 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.012G032300 [exp] 49 / 7e-08 AT5G15290 207 / 1e-68 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 47 / 5e-07 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 46 / 1e-06 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10012808 pacid=23142324 polypeptide=Lus10012808 locus=Lus10012808.g ID=Lus10012808.BGIv1.0 annot-version=v1.0 ATGTCCACCGCCGAGCAGACATTTATGGGCCGCAAAGCTAAATTCAGTCACTCCCCTGCCTTCATATACTTCGTTGCAGCACTATGTGTAGCATCCGCTT ACACGATCATAACTCTGCTAGCATCAGTGGGAGTGATCCTGAAGCCACATCTTGCCACCAAGTTCTTGCTCCATTTCATCTTCATGGATGTGGTGATGCT AGGGGTAGTTTCAACGGCGACGGCGGCGGCGGGTGGGGTTGCGTACATAGGACTGAAGGGGAACAAGCACGCAGGGTGGTCAAAGGTTTGCAGCGCTTAT GACAAGTACTGTGACCACTTGGGAAGCTCAATTGCAATCTCGCTATTCGCTTCGGTTCTTCTGCTTCTCCTTGTTTTCCTCTCCGTCCTGTCTCTCCACC GCAAGATCCCACCTCCTGCCTAG
AA sequence Show only first row Show all	>Lus10012808 pacid=23142324 polypeptide=Lus10012808 locus=Lus10012808.g ID=Lus10012808.BGIv1.0 annot-version=v1.0 MSTAEQTFMGRKAKFSHSPAFIYFVAALCVASAYTIITLLASVGVILKPHLATKFLLHFIFMDVVMLGVVSTATAAAGGVAYIGLKGNKHAGWSKVCSAY DKYCDHLGSSIAISLFASVLLLLLVFLSVLSLHRKIPPPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06390			Uncharacterised protein family...		Lus10012808 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	1.4	0.9477
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012041 [exp]	2.0	0.9442
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	4.5	0.9285
					Lus10022087 [exp]	4.7	0.9275
AT4G12840			Protein of unknown function (D...		Lus10041107 [exp]	6.5	0.9320
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10024484 [exp]	7.9	0.9301
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	8.9	0.9305
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	9.2	0.9329
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	10.7	0.9043
AT2G43120			RmlC-like cupins superfamily p...		Lus10001159 [exp]	11.7	0.8786

Compare expression of checked genes

Lus10012808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.