Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15630 100 / 4e-26 Uncharacterised protein family (UPF0497) (.1) AT4G15620 97 / 3e-25 Uncharacterised protein family (UPF0497) (.1) AT4G15610 64 / 1e-12 Uncharacterised protein family (UPF0497) (.1) AT3G06390 54 / 7e-09 Uncharacterised protein family (UPF0497) (.1) AT4G20390 50 / 2e-07 Uncharacterised protein family (UPF0497) (.1) AT1G14160 48 / 7e-07 Uncharacterised protein family (UPF0497) (.1) AT5G15290 47 / 1e-06 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT5G44550 46 / 3e-06 Uncharacterised protein family (UPF0497) (.1) AT4G03540 44 / 1e-05 Uncharacterised protein family (UPF0497) (.1) AT1G03700 42 / 0.0001 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033971 [exp] 171 / 1e-54 AT4G15630 162 / 1e-51 Uncharacterised protein family (UPF0497) (.1) Lus10000781 [exp] 58 / 3e-10 AT5G44550 171 / 5e-54 Uncharacterised protein family (UPF0497) (.1) Lus10041528 [exp] 52 / 1e-08 AT4G15620 74 / 5e-17 Uncharacterised protein family (UPF0497) (.1) Lus10012562 [exp] 53 / 2e-08 AT4G15620 77 / 1e-17 Uncharacterised protein family (UPF0497) (.1) Lus10032548 [exp] 53 / 2e-08 AT1G03700 62 / 3e-14 Uncharacterised protein family (UPF0497) (.1) Lus10008067 [exp] 53 / 4e-08 AT5G11720 1072 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10031998 [exp] 51 / 1e-07 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10035168 [exp] 49 / 7e-07 AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) Lus10032005 [exp] 47 / 1e-06 AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205100 [exp] 132 / 5e-39 AT4G15630 144 / 1e-43 Uncharacterised protein family (UPF0497) (.1) Potri.011G154900 [exp] 69 / 1e-14 AT4G20390 169 / 1e-53 Uncharacterised protein family (UPF0497) (.1) Potri.008G205000 [exp] 63 / 3e-12 AT3G06390 130 / 4e-38 Uncharacterised protein family (UPF0497) (.1) Potri.001G442300 [exp] 63 / 3e-12 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1) Potri.017G062100 [exp] 55 / 2e-09 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 54 / 6e-09 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 52 / 2e-08 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 50 / 2e-07 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 44 / 2e-05 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 44 / 2e-05 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10012809 pacid=23142358 polypeptide=Lus10012809 locus=Lus10012809.g ID=Lus10012809.BGIv1.0 annot-version=v1.0 ATGGAGAATAATAACTCAGGGGTGAAGTCGAGCCACGCAATGATGGACGGAGTTGAGAACGGCAGCCATCAGCACCACCGTAACAGCGGTGGTGGTGGTA GTAGAGGATCCAAGACCGGCGAGGTTGTCCTTAGAATCGGAGCGTTGTTGCTGACGTTGGCAGCCGCCATAGTGATGGGAGTTGATAAACAGACCAAGAC AGTTCCCTTGCAGCTCCTCCCTTCCCTTCCTCCCGTCAACGTCCCCGTCTCCGCCAAGTGGCACTACCTCTCCGCCTTTGTGTTTTTCGTGGTGGCAAAT GCGATAGCGTGCTCCTACGCGCTGCTCTCCATCGTAATAGCGATGGCCGGGAAGAAAGGGATGGCGTCGGCGGTGACGATGATAATGGACCTGTTGATGG TGGCGCTTCTGTTCGCCGGTAACGGAGCGGCCACGGCGGTCGGACTGTTAGGCCGCAACGGGAACTCGCACGTGCGGTGGAACAAAGTGTGTAATGTGTT CGACAAATTCTGCCACCAAGTCGCCGCCTCCATCGGACTGTCGTTAATCGGCTCTCTACTGTTCGTTTTGCTGGTTTTGGTCGCCGTCGTGCGACTTCAC CGCAAATCCTCCTGA
AA sequence Show only first row Show all	>Lus10012809 pacid=23142358 polypeptide=Lus10012809 locus=Lus10012809.g ID=Lus10012809.BGIv1.0 annot-version=v1.0 MENNNSGVKSSHAMMDGVENGSHQHHRNSGGGGSRGSKTGEVVLRIGALLLTLAAAIVMGVDKQTKTVPLQLLPSLPPVNVPVSAKWHYLSAFVFFVVAN AIACSYALLSIVIAMAGKKGMASAVTMIMDLLMVALLFAGNGAATAVGLLGRNGNSHVRWNKVCNVFDKFCHQVAASIGLSLIGSLLFVLLVLVAVVRLH RKSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15630			Uncharacterised protein family...		Lus10012809 [exp]	0	1
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10027321 [exp]	1.4	0.8993
					Lus10041110 [exp]	5.9	0.8793
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10034618 [exp]	6.7	0.8629
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	8.8	0.8925
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	10.4	0.8500
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	12.6	0.8935
AT1G03610			Protein of unknown function (D...		Lus10039803 [exp]	16.2	0.8325
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10041990 [exp]	16.3	0.8630
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	17.3	0.8901
AT1G78895			Reticulon family protein (.1)		Lus10034807 [exp]	24.7	0.8625

Compare expression of checked genes

Lus10012809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.