Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15640 391 / 3e-135 unknown protein AT3G21465 387 / 7e-134 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033970 [exp] 642 / 0 AT4G15640 330 / 4e-111 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205300 [exp] 412 / 2e-143 AT3G21465 429 / 8e-150 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012810 pacid=23142374 polypeptide=Lus10012810 locus=Lus10012810.g ID=Lus10012810.BGIv1.0 annot-version=v1.0 ATGAAACTCTTCTCCGGCTGCCGTCGGCTTGCTCGGGTTTTGAAGTCGCCGATTCCACTCAATGCCGCATCAAGCTGTCGCCACTTTTCCTCCGAGTCCC GAATCCTTATTGCTCCCCAGGCTTCTCTCCAATGGCTACACCAGCAGAACGATACATTTTCTTCTATTCGTTTCCCAGGTCATTACGCTGCCAAGACATA TTTCTCTACGGAATCGGGTAGCGCTGAGTACAATCCAACAGATTCTGTGAAGGAGTTCCACGAGAAGATTCTTGAGTCGGTCAATGCTAAGAGGACGATG GCTCCGAATGCCTGGTTGTGGTCACTCATCGAGAAATGTCAGAACCACAAAGATATCGAGCTTATCTTTGATTCTTTGGAGAATCTCCGGAGATTTCGGC TTTCAAATCTCCAAATTCATGATAATTTCAACTGCAACCTCTGCCGTGAAATTGCGAAAGCTTGTGCTCGTGTAGGAGCCATTGATATTGCTCCCATTCT TCAGAAATATGCTAAGGATCATAACGATGCCAAATTAATGGTTGAAGTAATGGAGCTGATGAAAAAGAACGATGTGCCACTTCAACCTAGTACAGCAGAT ATTGTTTTCAGTATCTGTAACAATGTGGATAATTGGGATTTGATCTTGAAGTACTCCAAGAAGTTTTCCAAGGCTGGAGTTCAATTTAGAAGAGCTGCTT TTGATGCATGGATGGAGTTTGCTGCCAAAAGAGGGGACACAAAGGCATTATGGGAAATCGAAAAGCTGCGATCTCAGACAATGAAGCAGCACAGCCTTGT CACTGCGTTCTCTTGTGCCAAGGGTTTGATACTAGAACGTAAGCCGCAGGATGCTGCCACAGTCATCCAAGTCCTTAATGAGACTGTGGCTGAGACCAAG AAGTCAGGCATTGTGGCAGAGTTCCAGAAATTAGTGAGCGAATGGCCAGTGGATGTGATTAAGCACTGCCCAGAGGAAGAAAAGAAGGGACTAGCATCTG CATTGAAGTCTGATATCCCGGTCATGATCACCTCTGTAATGAACATGGGGCTAGATGTGAATTCAGATATAGAGAAACTAACCAGCAAGGTAGAAATTCT CGAGTGA
AA sequence Show only first row Show all	>Lus10012810 pacid=23142374 polypeptide=Lus10012810 locus=Lus10012810.g ID=Lus10012810.BGIv1.0 annot-version=v1.0 MKLFSGCRRLARVLKSPIPLNAASSCRHFSSESRILIAPQASLQWLHQQNDTFSSIRFPGHYAAKTYFSTESGSAEYNPTDSVKEFHEKILESVNAKRTM APNAWLWSLIEKCQNHKDIELIFDSLENLRRFRLSNLQIHDNFNCNLCREIAKACARVGAIDIAPILQKYAKDHNDAKLMVEVMELMKKNDVPLQPSTAD IVFSICNNVDNWDLILKYSKKFSKAGVQFRRAAFDAWMEFAAKRGDTKALWEIEKLRSQTMKQHSLVTAFSCAKGLILERKPQDAATVIQVLNETVAETK KSGIVAEFQKLVSEWPVDVIKHCPEEEKKGLASALKSDIPVMITSVMNMGLDVNSDIEKLTSKVEILE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15640			unknown protein		Lus10012810 [exp]	0	1
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	4.1	0.8759
AT3G16810		APUM24	pumilio 24 (.1)		Lus10016836 [exp]	5.5	0.8614
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10028007 [exp]	5.7	0.8514
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	6.0	0.8686
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10003653 [exp]	6.9	0.7995
AT5G15610			Proteasome component (PCI) dom...		Lus10013192 [exp]	7.1	0.8561
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	7.1	0.8674
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011504 [exp]	7.9	0.8598
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	9.5	0.8601
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	9.6	0.8646

Compare expression of checked genes

Lus10012810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.