Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18650 466 / 9e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT3G62970 354 / 3e-123 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G22920 337 / 2e-116 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G25560 318 / 5e-109 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT3G18290 197 / 8e-57 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT1G74770 187 / 2e-53 zinc ion binding (.1) AT1G18910 179 / 2e-50 zinc ion binding;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033969 [exp] 536 / 0 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10023914 [exp] 191 / 9e-59 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10034346 [exp] 189 / 7e-54 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10005111 [exp] 189 / 9e-54 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10008628 [exp] 180 / 1e-50 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042190 [exp] 148 / 3e-40 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10042188 [exp] 104 / 5e-27 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10008627 [exp] 94 / 4e-21 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205400 [exp] 482 / 3e-174 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.014G134400 [exp] 374 / 3e-131 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G005700 [exp] 341 / 5e-118 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 328 / 7e-113 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.006G121801 [exp] 325 / 3e-112 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.010G122200 [exp] 197 / 7e-57 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G123300 [exp] 195 / 5e-56 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 193 / 2e-55 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.015G066600 [exp] 172 / 4e-48 AT1G74770 1199 / 0.0 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF05495 [flax] [poplar] zf-CHY CHY zinc finger
Representative CDS sequence Show only first row Show all	>Lus10012811 pacid=23142360 polypeptide=Lus10012811 locus=Lus10012811.g ID=Lus10012811.BGIv1.0 annot-version=v1.0 ATGGACGCCACCACTATTGCCCCCACTCTCGGTTCACCTCAATACACTCCAAAACAGGTATGGGGCGATGATGGGTTTTGGCAAGCAAAGGGCGCCGCTC CGTCCAATGAACGCCTTGGTTTTGGGAAGATGGGTTACGGATGCGAGCATTACAGGAGGAGATGCAAGATTCGAGCACCTTGCTGCAATGAAATATTCTC CTGCCGCCATTGCCACAATGAGGCTGCGAGCATGTTGAAAAATATCAATGATCGCCACGAGCTGGATCGATCCGATGTCAAGCAAGTTGTATGTGAAGTT TGTGACACAGAGCAGCCGGTTGCCCAAGTTTGTACAAACTGTGGTGTCAACATGGGGGAATACTTCTGTTCCAAATGCAAATTCTTTGACGACGATACGG AGAAAGGACAGTTCCATTGTGATGATTGTGGCATTTGCAGGGTTGGTGGTCGGGAGAATTTCTTCCACTGCAAGAAGTGCGGTTCTTGCTATGCAATTTC TCTCCGGGACAACCATTCGTGTGTGGAGAACTCTATGCACCACCACTGCCCAATTTGTTACGAGTACTTATTTGACTCCATGAAGGACACCATAGTAATG AAATGTGGTCACACAATGCACTGCGAATGTCACTATGAAATGATAAAGCGTGACCGATACTGTTGTCCAATATGCTCAAAGTCTGTCATCGACATGTCCA AGACTTGGAAGAGCTTAGATGAGGAGATAGAAGCTACAGTCATGCCAGAGGATTACCGAAATAAAAAGGTGTGGATCCTATGCAACGATTGCAATGACAC AACAGAAGTGTATTTCCATATAATTGGACAGAAATGCAGCCACTGCAAATCATACAACACAAGAACTATTCAACCTCCGGTTCTTCCGCAACAGTGA
AA sequence Show only first row Show all	>Lus10012811 pacid=23142360 polypeptide=Lus10012811 locus=Lus10012811.g ID=Lus10012811.BGIv1.0 annot-version=v1.0 MDATTIAPTLGSPQYTPKQVWGDDGFWQAKGAAPSNERLGFGKMGYGCEHYRRRCKIRAPCCNEIFSCRHCHNEAASMLKNINDRHELDRSDVKQVVCEV CDTEQPVAQVCTNCGVNMGEYFCSKCKFFDDDTEKGQFHCDDCGICRVGGRENFFHCKKCGSCYAISLRDNHSCVENSMHHHCPICYEYLFDSMKDTIVM KCGHTMHCECHYEMIKRDRYCCPICSKSVIDMSKTWKSLDEEIEATVMPEDYRNKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRTIQPPVLPQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10012811 [exp]	0	1
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	2.0	0.9410
AT2G30600			BTB/POZ domain-containing prot...		Lus10012262 [exp]	2.8	0.9403
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	3.7	0.9294
AT2G04690			Pyridoxamine 5'-phosphate oxid...		Lus10039466 [exp]	3.9	0.9180
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10041622 [exp]	4.9	0.9290
AT3G56680			Single-stranded nucleic acid b...		Lus10027292 [exp]	5.5	0.9398
AT1G27290			unknown protein		Lus10003121 [exp]	8.5	0.9295
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	9.5	0.9279
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	11.4	0.9326
AT2G24550			unknown protein		Lus10026939 [exp]	13.4	0.9346

Compare expression of checked genes

Lus10012811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.